Mercurial > repos > tduigou > icfree_learner

comparison learner.xml @ 7:cac9eb21fb69 draft

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planemo upload for repository https://github.com/brsynth/icfree-ml commit 7a51fc3ee7c0eb4b07d47772340ff1d3dab5e7aa-dirty
author tduigou
date Thu, 06 Feb 2025 15:11:19 +0000
parents 09df65e2df97
children fad19e8ec225
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6:09df65e2df97 7:cac9eb21fb69
36 --km '$adv.km' 36 --km '$adv.km'
37 --ks '$adv.ks' 37 --ks '$adv.ks'
38 --save_plot 38 --save_plot
39 --verbose && ls 'outdir' 39 --verbose && ls 'outdir'
40 ]]></command> 40 ]]></command>
41 <environment_variables>
42 <environment_variable name="MPLCONFIGDIR">.matplotlib</environment_variable>
43 </environment_variables>
41 <inputs> 44 <inputs>
42 <param name="input_data_csv" type="data" format="csv" multiple="true" label="Input data files" help="Input data files" /> 45 <param name="input_data_csv" type="data" format="csv" multiple="true" label="Input data files" help="Input data files" />
43 <param name="input_param_tsv" type="data" format="tabular" label="Parameter values for the experiments" help="Parameter values for the experiment"/> 46 <param name="input_param_tsv" type="data" format="tabular" label="Parameter values for the experiments" help="Parameter values for the experiment"/>
44 <section name="adv" title="Advanced Options" expanded="false"> 47 <section name="adv" title="Advanced Options" expanded="false">
45 <param name="name_list" type="text" value="" label="Labels of the feature list" help="A comma-separated string of column names or identifiers, converted to a list of strings representing columns that contain labels (y). This separates y columns from the rest (X features). (Default: Yield1,Yield2,Yield3,Yield4,Yield5)" /> 48 <param name="name_list" type="text" value="" label="Labels of the feature list" help="A comma-separated string of column names or identifiers, converted to a list of strings representing columns that contain labels (y). This separates y columns from the rest (X features). (Default: Yield1,Yield2,Yield3,Yield4,Yield5)" />
68 </conditional> 71 </conditional>
69 </section> 72 </section>
70 </inputs> 73 </inputs>
71 <outputs> 74 <outputs>
72 <data name="output_csv" format="csv" label="${tool.name} - Data"> 75 <data name="output_csv" format="csv" label="${tool.name} - Data">
73 <discover_datasets pattern="(?P&lt;designation&gt;.*).csv" ext="csv" directory="outdir" assign_primary_output="true" /> 76 <discover_datasets pattern="(?P&lt;designation&gt;.*)\.csv" ext="csv" directory="outdir" />
74 <!-- <discover_datasets pattern="__designation_and_ext__" ext="csv" directory="outdir" assign_primary_output="true"/> -->
75 </data> 77 </data>
76 <collection name="output_png" type="list" label="${tool.name} - Plot"> 78 <collection name="output_png" type="list" label="${tool.name} - Plot">
77 <discover_datasets pattern="(?P&lt;name&gt;.*).png" format="png" directory="outdir" /> 79 <discover_datasets pattern="(?P&lt;name&gt;.*)\.png" format="png" directory="outdir" />
78 </collection> 80 </collection>
79 </outputs> 81 </outputs>
80 <tests> 82 <tests>
81 <test> 83 <test>
82 <!-- python -m icfree.learner -data_folder learner -parameter_file learner.input.param.tsv -output_folder tmp -save_plot -verbose -seed 85 --> 84 <!-- python -m icfree.learner -data_folder learner -parameter_file learner.input.param.tsv -output_folder tmp -save_plot -verbose -seed 85 -->