Mercurial > repos > tduigou > icfree_learner

diff learner.xml @ 7:cac9eb21fb69 draft

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planemo upload for repository https://github.com/brsynth/icfree-ml commit 7a51fc3ee7c0eb4b07d47772340ff1d3dab5e7aa-dirty
author tduigou
date Thu, 06 Feb 2025 15:11:19 +0000
parents 09df65e2df97
children fad19e8ec225
line wrap: on
line diff
--- a/learner.xml	Thu Feb 06 14:07:50 2025 +0000
+++ b/learner.xml	Thu Feb 06 15:11:19 2025 +0000
@@ -38,6 +38,9 @@
             --save_plot
             --verbose && ls 'outdir'
     ]]></command>
+    <environment_variables>
+        <environment_variable name="MPLCONFIGDIR">.matplotlib</environment_variable>
+    </environment_variables>
     <inputs>
         <param name="input_data_csv" type="data" format="csv" multiple="true" label="Input data files" help="Input data files" />
         <param name="input_param_tsv" type="data" format="tabular" label="Parameter values for the experiments" help="Parameter values for the experiment"/>
@@ -70,11 +73,10 @@
     </inputs>
     <outputs>
         <data name="output_csv" format="csv" label="${tool.name} - Data">
-            <discover_datasets pattern="(?P&lt;designation&gt;.*).csv" ext="csv" directory="outdir" assign_primary_output="true" />
-            <!-- <discover_datasets pattern="__designation_and_ext__" ext="csv" directory="outdir" assign_primary_output="true"/> -->
+            <discover_datasets pattern="(?P&lt;designation&gt;.*)\.csv" ext="csv" directory="outdir" />
         </data>
         <collection name="output_png" type="list" label="${tool.name} - Plot">
-            <discover_datasets pattern="(?P&lt;name&gt;.*).png" format="png" directory="outdir" />
+            <discover_datasets pattern="(?P&lt;name&gt;.*)\.png" format="png" directory="outdir" />
         </collection>
     </outputs>
     <tests>