Mercurial > repos > tduigou > parameters_maystro_workflow_2

comparison maystro_workflow_2.xml @ 1:c6708a220f23 draft default tip

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planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit e8c8f102cab10531ed588be4ecb8a0d01e797f09
author tduigou
date Tue, 06 Jan 2026 11:38:30 +0000
parents f80ed73f9f9a
children
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0:f80ed73f9f9a 1:c6708a220f23
83 <param name="kmer_size" value="15" /> 83 <param name="kmer_size" value="15" />
84 <param name="methylation_protection" value="true"/> 84 <param name="methylation_protection" value="true"/>
85 <param name="assembly_plan_name" value="Type2sRestrictionAssembly" /> 85 <param name="assembly_plan_name" value="Type2sRestrictionAssembly" />
86 <param name="topology" value='circular'/> 86 <param name="topology" value='circular'/>
87 <param name="enzyme" value="auto"/> 87 <param name="enzyme" value="auto"/>
88 <param name="execution" value="true" /> 88 <param name="DB|execution" value="true" />
89 <param name="db_uri" value="postgresql://postgres:RK17@localhost:5432/test_fragments_db" /> 89 <param name="DB|db_uri" value="postgresql://postgres:RK17@localhost:5432/test_fragments_db" />
90 <param name="table_name" value="sample" /> 90 <param name="DB|table_name" value="sample" />
91 <param name="fragment_column" value="fragment" /> 91 <param name="DB|fragment_column" value="fragment" />
92 <param name="sequence_column" value="sequence" /> 92 <param name="DB|sequence_column" value="sequence" />
93 <param name="annotation_column" value="annotation" /> 93 <param name="DB|annotation_column" value="annotation" />
94 <output name="output_json"> 94 <output name="output_json">
95 <assert_contents> 95 <assert_contents>
96 <has_n_lines n="18" /> 96 <has_n_lines n="18" />
97 </assert_contents> 97 </assert_contents>
98 </output> 98 </output>
99 </test> 99 </test>
100 <!--JSON parameters set--> 100 <!--JSON parameters set-->
101 <test> 101 <test>
102 <param name="user_json" value='test_json_workflow2.json'/> 102 <param name="DB|user_json" value='test_json_workflow2.json'/>
103 <output name="output_json"> 103 <output name="output_json">
104 <assert_contents> 104 <assert_contents>
105 <has_n_lines n="18" /> 105 <has_n_lines n="18" />
106 </assert_contents> 106 </assert_contents>
107 </output> 107 </output>