diff maystro_workflow_2.xml @ 1:c6708a220f23 draft default tip

planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit e8c8f102cab10531ed588be4ecb8a0d01e797f09
author tduigou
date Tue, 06 Jan 2026 11:38:30 +0000
parents f80ed73f9f9a
children
line wrap: on
line diff
--- a/maystro_workflow_2.xml	Wed Jul 23 09:40:00 2025 +0000
+++ b/maystro_workflow_2.xml	Tue Jan 06 11:38:30 2026 +0000
@@ -85,12 +85,12 @@
             <param name="assembly_plan_name" value="Type2sRestrictionAssembly" />
             <param name="topology" value='circular'/>
             <param name="enzyme" value="auto"/>
-            <param name="execution" value="true" />
-            <param name="db_uri" value="postgresql://postgres:RK17@localhost:5432/test_fragments_db" />
-            <param name="table_name" value="sample" />
-            <param name="fragment_column" value="fragment" />
-            <param name="sequence_column" value="sequence" />
-            <param name="annotation_column" value="annotation" />
+            <param name="DB|execution" value="true" />
+            <param name="DB|db_uri" value="postgresql://postgres:RK17@localhost:5432/test_fragments_db" />
+            <param name="DB|table_name" value="sample" />
+            <param name="DB|fragment_column" value="fragment" />
+            <param name="DB|sequence_column" value="sequence" />
+            <param name="DB|annotation_column" value="annotation" />
             <output name="output_json">
                 <assert_contents>
                     <has_n_lines n="18" />
@@ -99,7 +99,7 @@
         </test>
         <!--JSON parameters set-->
         <test> 
-            <param name="user_json" value='test_json_workflow2.json'/>
+            <param name="DB|user_json" value='test_json_workflow2.json'/>
             <output name="output_json">
                 <assert_contents>
                     <has_n_lines n="18" />