Mercurial > repos > tduigou > retrorules

annotate query.py @ 3:95b4196b4ded draft

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planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
author tduigou
date Mon, 15 Sep 2025 12:59:58 +0000
parents 58bbbff358d6
children 815748762646
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6d20407d9a72 planemo upload for repository https://github.com/brsynth/galaxytools commit ccd77691de09b70e3048dca6be832dd93964c635-dirty
tduigou
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diff changeset
1 import argparse
6d20407d9a72 planemo upload for repository https://github.com/brsynth/galaxytools commit ccd77691de09b70e3048dca6be832dd93964c635-dirty
tduigou
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2 import json
6d20407d9a72 planemo upload for repository https://github.com/brsynth/galaxytools commit ccd77691de09b70e3048dca6be832dd93964c635-dirty
tduigou
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3 import logging
6d20407d9a72 planemo upload for repository https://github.com/brsynth/galaxytools commit ccd77691de09b70e3048dca6be832dd93964c635-dirty
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4 import sys
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95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
tduigou
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5 from typing import Dict, Tuple
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6d20407d9a72 planemo upload for repository https://github.com/brsynth/galaxytools commit ccd77691de09b70e3048dca6be832dd93964c635-dirty
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7 import requests
6d20407d9a72 planemo upload for repository https://github.com/brsynth/galaxytools commit ccd77691de09b70e3048dca6be832dd93964c635-dirty
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9 BASE_URL = "https://retrorules.org/api"
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6d20407d9a72 planemo upload for repository https://github.com/brsynth/galaxytools commit ccd77691de09b70e3048dca6be832dd93964c635-dirty
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12 def from_templates(
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
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13 smarts_str: str,
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
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14 template_ids_str: str,
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
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15 reaction_ids_str: str,
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
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16 datasets_str: str,
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
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17 chemical_domain_str: str,
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
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18 ec_number_str: str,
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
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19 min_radius_int: int,
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
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20 valid_str: str,
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
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21 dedup_str: str,
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
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22 limit_int: int,
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
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23 offset_int: int,
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
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24 ) -> Tuple:
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
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25 url = f"{BASE_URL}/templates"
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
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26 params = []
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
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27 if smarts_str:
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
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28 params.append(("q", smarts_str))
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
tduigou
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29 if template_ids_str:
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
tduigou
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30 params.append(("template_ids", ",".join(template_ids_str)))
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
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parents: 2
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31 if reaction_ids_str:
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
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32 params.append(("reaction_ids", ",".join(reaction_ids_str)))
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
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33 if datasets_str and datasets_str != "any":
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
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34 params.append(("datasets", datasets_str))
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
tduigou
parents: 2
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35 if chemical_domain_str and chemical_domain_str != "any":
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
tduigou
parents: 2
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36 params.append(("chemical_domain", chemical_domain_str))
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
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37 if ec_number_str:
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
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38 params.append(("ec", ec_number_str))
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
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39 if min_radius_int is not None:
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
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40 params.append(("min_radius", str(min_radius_int)))
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
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41 if valid_str and valid_str != "any":
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
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42 params.append(("valid", valid_str))
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
tduigou
parents: 2
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43 if dedup_str and dedup_str != "any":
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
tduigou
parents: 2
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44 params.append(("dedup", dedup_str))
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
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45 if limit_int:
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
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46 params.append(("limit", str(limit_int)))
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
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47 if offset_int:
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
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48 params.append(("offset", str(offset_int)))
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49 return url, params
6d20407d9a72 planemo upload for repository https://github.com/brsynth/galaxytools commit ccd77691de09b70e3048dca6be832dd93964c635-dirty
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50
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51 def from_templates_summary(template_id_str: str) -> Tuple:
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
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52 url = f"{BASE_URL}/templates/{template_id_str}/summary"
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
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53 params = {}
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54 return url, params
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55
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56 def from_templates_sources(template_id_str: str) -> Tuple:
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57 url = f"{BASE_URL}/templates/{template_id_str}/sources"
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58 params = {}
0
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59 return url, params
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60
3
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61 def from_templates_count(
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62 smarts_str: str,
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63 template_ids_str: str,
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
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64 reaction_ids_str: str,
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65 datasets_str: str,
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66 chemical_domain_str: str,
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67 ec_number_str: str,
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68 min_radius_int: int,
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69 valid_str: str,
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70 dedup_str: str,
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71 ) -> Tuple:
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72 url = f"{BASE_URL}/templates_count"
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73 params = []
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74 if smarts_str:
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75 params.append(("q", smarts_str))
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76 if template_ids_str:
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
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77 params.append(("template_ids", ",".join(template_ids_str)))
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78 if reaction_ids_str:
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79 params.append(("reaction_ids", ",".join(reaction_ids_str)))
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
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80 if datasets_str and datasets_str != "any":
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81 params.append(("datasets", datasets_str))
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82 if chemical_domain_str and chemical_domain_str != "any":
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
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parents: 2
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83 params.append(("chemical_domain", chemical_domain_str))
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84 if ec_number_str:
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
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85 params.append(("ec", ec_number_str))
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86 if min_radius_int is not None:
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87 params.append(("min_radius", str(min_radius_int)))
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
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88 if valid_str and valid_str != "any":
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89 params.append(("valid", valid_str))
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90 if dedup_str and dedup_str != "any":
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91 params.append(("dedup", dedup_str))
0
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92 return url, params
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93
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94 def from_templates_export(
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95 generation_token_str: str,
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96 smarts_str: str,
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97 template_ids_str: str,
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98 reaction_ids_str: str,
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99 datasets_str: str,
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100 chemical_domain_str: str,
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101 ec_number_str: str,
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102 min_radius_int: int,
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103 valid_str: str,
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104 dedup_str: str,
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105 ) -> Tuple:
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106 url = f"{BASE_URL}/templates_export"
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107 params = []
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108 if generation_token_str:
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109 params.append(("gen_token", generation_token_str))
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110 if smarts_str:
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111 params.append(("q", smarts_str))
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112 if template_ids_str:
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113 params.append(("template_ids", ",".join(template_ids_str)))
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114 if reaction_ids_str:
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115 params.append(("reaction_ids", ",".join(reaction_ids_str)))
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116 if datasets_str and datasets_str != "any":
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117 params.append(("datasets", datasets_str))
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118 if chemical_domain_str and chemical_domain_str != "any":
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119 params.append(("chemical_domain", chemical_domain_str))
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120 if ec_number_str:
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121 params.append(("ec", ec_number_str))
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122 if min_radius_int is not None:
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123 params.append(("min_radius", str(min_radius_int)))
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124 if valid_str and valid_str != "any":
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125 params.append(("valid", valid_str))
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126 if dedup_str and dedup_str != "any":
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127 params.append(("dedup", dedup_str))
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128 return url, params
0
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129
3
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130 def query(url: str, params: Dict):
0
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131 response = requests.get(url, params=params)
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132 response.raise_for_status()
3
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133 return response
0
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134
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135 def write_json(path: str, data: Dict):
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136 with open(path, "w") as fd:
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137 json.dump(data, fd, indent=4)
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138
3
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139 def write_tab(path: str, data: str):
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140 with open(path, "w") as fd:
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141 fd.write(data)
0
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142
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143 def main():
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144 parser = argparse.ArgumentParser(
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145 description="Query RetroRules API via command-line endpoints."
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146 )
2
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147 subparsers = parser.add_subparsers(dest="command")
0
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148
3
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149 # Subcommand: templates
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150 parser_tem = subparsers.add_parser("templates", help="From templates")
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151 parser_tem.add_argument("--input-smarts-str", help="Exact SMARTS")
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152 parser_tem.add_argument(
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153 "--input-template-ids-str",
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154 nargs="*",
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155 help="Space separated list of template IDs",
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156 )
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157 parser_tem.add_argument(
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158 "--input-reaction-ids-str",
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159 nargs="*",
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160 help="Space separated list of reaction IDs",
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161 )
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162 parser_tem.add_argument(
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163 "--input-datasets-str",
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164 default="any",
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165 choices=["any", "metanetx", "rhea", "uspto"],
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166 help="Select a specific database",
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167 )
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168 parser_tem.add_argument(
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169 "--input-chemical-domain-str",
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170 default="any",
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171 choices=["any", "biochem", "orgchem"],
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172 )
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173 parser_tem.add_argument(
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174 "--input-ec-number-str",
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175 help="EC number to filter templates",
0
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176 )
3
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177 parser_tem.add_argument(
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178 "--input-min-radius-int",
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179 type=int,
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180 help="Single radius of the template",
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181 )
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182 parser_tem.add_argument(
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183 "--input-valid-str",
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184 default="true",
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185 choices=["any", "true", "false"],
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186 help="By default only valid templates are returned",
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187 )
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188 parser_tem.add_argument(
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189 "--input-dedup-str",
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190 default="true",
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191 choices=["true", "false"],
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192 help="By default deduplicated templates are returned",
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193 )
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194 parser_tem.add_argument(
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195 "--input-limit-int",
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196 type=int,
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197 help="Limit number of returned templates",
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198 )
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199 parser_tem.add_argument(
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200 "--input-offset-int",
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201 type=int,
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202 help="Offset the list of returned templates",
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203 )
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204 parser_tem.add_argument(
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205 "--output-data-json",
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206 required=True,
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207 help="Path to output JSON file",
0
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208 )
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209
3
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210 # Subcommand: templates-summary
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211 parser_tem_sum = subparsers.add_parser("templates-summary", help="From templates-summary")
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212 parser_tem_sum.add_argument("--input-template-id-str", required=True, help="Template ID")
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213 parser_tem_sum.add_argument(
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214 "--output-data-json",
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215 required=True,
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216 help="Path to output JSON file",
0
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217 )
3
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218
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219 # Subcommand: templates-sources
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220 parser_tem_sou = subparsers.add_parser("templates-sources", help="From templates-sources")
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221 parser_tem_sou.add_argument("--input-template-id-str", required=True, help="Template ID")
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222 parser_tem_sou.add_argument(
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223 "--output-data-json",
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224 required=True,
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225 help="Path to output JSON file",
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226 )
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227
3
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228 # Subcommand: templates-count
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229 parser_cou = subparsers.add_parser("templates-count", help="From templates-count")
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230 parser_cou.add_argument("--input-smarts-str", help="Exact SMARTS")
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231 parser_cou.add_argument(
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232 "--input-template-ids-str",
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233 nargs="*",
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234 help="Space separated list of template IDs",
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235 )
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236 parser_cou.add_argument(
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237 "--input-reaction-ids-str",
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238 nargs="*",
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239 help="Space separated list of reaction IDs",
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240 )
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241 parser_cou.add_argument(
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242 "--input-datasets-str",
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243 default="any",
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244 choices=["any", "metanetx", "rhea", "uspto"],
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245 help="Select a specific database",
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246 )
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247 parser_cou.add_argument(
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248 "--input-chemical-domain-str",
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249 default="any",
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250 choices=["any", "biochem", "orgchem"],
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251 )
3
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252 parser_cou.add_argument(
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253 "--input-ec-number-str",
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254 help="EC number to filter templates",
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255 )
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256 parser_cou.add_argument(
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257 "--input-min-radius-int",
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258 type=int,
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259 help="Single radius of the template",
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260 )
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261 parser_cou.add_argument(
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262 "--input-valid-str",
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263 default="true",
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264 choices=["any", "true", "false"],
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265 help="By default only valid templates are returned",
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266 )
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267 parser_cou.add_argument(
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268 "--input-dedup-str",
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269 default="true",
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270 choices=["true", "false"],
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271 help="By default deduplicated templates are returned",
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272 )
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273 parser_cou.add_argument(
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274 "--output-data-json",
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275 required=True,
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276 help="Path to output JSON file",
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277 )
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278
3
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279 # Subcommand: templates-export
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280 parser_exp = subparsers.add_parser("templates-export", help="From templates-export")
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281 parser_exp.add_argument(
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282 "--input-generation-token-str",
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283 help="Generation token from RetroRules web interface",
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284 )
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285 parser_exp.add_argument("--input-smarts-str", help="Exact SMARTS")
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286 parser_exp.add_argument(
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287 "--input-template-ids-str",
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288 nargs="*",
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289 help="Space separated list of template IDs",
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290 )
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291 parser_exp.add_argument(
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292 "--input-reaction-ids-str",
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293 nargs="*",
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294 help="Space separated list of reaction IDs",
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295 )
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296 parser_exp.add_argument(
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297 "--input-datasets-str",
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298 default="any",
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299 choices=["any", "metanetx", "rhea", "uspto"],
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300 help="Select a specific database",
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301 )
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302 parser_exp.add_argument(
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303 "--input-chemical-domain-str",
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304 default="any",
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305 choices=["any", "biochem", "orgchem"],
0
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306 )
3
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307 parser_exp.add_argument(
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308 "--input-ec-number-str",
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309 help="EC number to filter templates",
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310 )
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311 parser_exp.add_argument(
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312 "--input-min-radius-int",
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313 type=int,
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314 help="Single radius of the template",
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315 )
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316 parser_exp.add_argument(
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317 "--input-valid-str",
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318 default="true",
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319 choices=["any", "true", "false"],
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320 help="By default only valid templates are returned",
0
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321 )
3
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322 parser_exp.add_argument(
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323 "--input-dedup-str",
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324 default="true",
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325 choices=["true", "false"],
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326 help="By default deduplicated templates are returned",
0
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327 )
3
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328 parser_exp.add_argument(
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329 "--output-data-json",
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330 help="Path to output JSON file",
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331 )
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332 parser_exp.add_argument(
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333 "--output-data-csv",
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334 help="Path to output CSV file",
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335 )
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336 parser_exp.add_argument(
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337 "--output-data-tsv",
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338 help="Path to output TSV file",
0
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339 )
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340
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341 logging.info("Query RetroRules - start")
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342 args = parser.parse_args()
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343
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344 try:
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345 logging.info("Build arguments")
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346 url, params = "", {}
3
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347 if args.command == "templates":
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348 url, params = from_templates(
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349 smarts_str=args.input_smarts_str,
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350 template_ids_str=args.input_template_ids_str,
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351 reaction_ids_str=args.input_reaction_ids_str,
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352 datasets_str=args.input_datasets_str,
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353 chemical_domain_str=args.input_chemical_domain_str,
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354 ec_number_str=args.input_ec_number_str,
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355 min_radius_int=args.input_min_radius_int,
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356 valid_str=args.input_valid_str,
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357 dedup_str=args.input_dedup_str,
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358 limit_int=args.input_limit_int,
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359 offset_int=args.input_offset_int,
0
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360 )
3
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361 elif args.command == "templates-summary":
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362 url, _ = from_templates_summary(
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363 template_id_str=args.input_template_id_str,
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364 )
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365 elif args.command == "templates-sources":
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366 url, _ = from_templates_sources(
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367 template_id_str=args.input_template_id_str,
0
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368 )
3
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369 elif args.command == "templates-count":
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370 url, params = from_templates_count(
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371 smarts_str=args.input_smarts_str,
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372 template_ids_str=args.input_template_ids_str,
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373 reaction_ids_str=args.input_reaction_ids_str,
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374 datasets_str=args.input_datasets_str,
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375 chemical_domain_str=args.input_chemical_domain_str,
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376 ec_number_str=args.input_ec_number_str,
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377 min_radius_int=args.input_min_radius_int,
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378 valid_str=args.input_valid_str,
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379 dedup_str=args.input_dedup_str,
0
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380 )
3
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381 elif args.command == "templates-export":
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382 url, params = from_templates_export(
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383 generation_token_str=args.input_generation_token_str,
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384 smarts_str=args.input_smarts_str,
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385 template_ids_str=args.input_template_ids_str,
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386 reaction_ids_str=args.input_reaction_ids_str,
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387 datasets_str=args.input_datasets_str,
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388 chemical_domain_str=args.input_chemical_domain_str,
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389 ec_number_str=args.input_ec_number_str,
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390 min_radius_int=args.input_min_radius_int,
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391 valid_str=args.input_valid_str,
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392 dedup_str=args.input_dedup_str,
0
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393 )
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394 else:
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395 parser.print_help()
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396 sys.exit(1)
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397
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398 logging.info("Query API")
3
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399 response = query(url=url, params=params)
0
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400
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401 logging.info("Write data")
3
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402 if "output_data_json" in vars(args) and args.output_data_json:
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403 write_json(path=args.output_data_json, data=response.json())
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404 if "output_data_csv" in vars(args) and args.output_data_csv:
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
tduigou
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405 write_tab(path=args.output_data_csv, data=response.text)
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
tduigou
parents: 2
diff changeset
406 if "output_data_tsv" in vars(args) and args.output_data_tsv:
95b4196b4ded planemo upload for repository https://github.com/brsynth/galaxytools commit 5e85823d729e9e09adf66ccfb7c47701077dccff-dirty
tduigou
parents: 2
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407 write_tab(path=args.output_data_tsv, data=response.text)
0
6d20407d9a72 planemo upload for repository https://github.com/brsynth/galaxytools commit ccd77691de09b70e3048dca6be832dd93964c635-dirty
tduigou
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408 except requests.HTTPError as e:
6d20407d9a72 planemo upload for repository https://github.com/brsynth/galaxytools commit ccd77691de09b70e3048dca6be832dd93964c635-dirty
tduigou
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409 logging.error(f"HTTP error: {e.response.status_code} - {e.response.text}")
6d20407d9a72 planemo upload for repository https://github.com/brsynth/galaxytools commit ccd77691de09b70e3048dca6be832dd93964c635-dirty
tduigou
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410 sys.exit(1)
6d20407d9a72 planemo upload for repository https://github.com/brsynth/galaxytools commit ccd77691de09b70e3048dca6be832dd93964c635-dirty
tduigou
parents:
diff changeset
411 except Exception as e:
6d20407d9a72 planemo upload for repository https://github.com/brsynth/galaxytools commit ccd77691de09b70e3048dca6be832dd93964c635-dirty
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diff changeset
412 logging.error(f"Error: {e}")
6d20407d9a72 planemo upload for repository https://github.com/brsynth/galaxytools commit ccd77691de09b70e3048dca6be832dd93964c635-dirty
tduigou
parents:
diff changeset
413 sys.exit(1)
6d20407d9a72 planemo upload for repository https://github.com/brsynth/galaxytools commit ccd77691de09b70e3048dca6be832dd93964c635-dirty
tduigou
parents:
diff changeset
414
6d20407d9a72 planemo upload for repository https://github.com/brsynth/galaxytools commit ccd77691de09b70e3048dca6be832dd93964c635-dirty
tduigou
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415 logging.info("Query RetroRules - end")
6d20407d9a72 planemo upload for repository https://github.com/brsynth/galaxytools commit ccd77691de09b70e3048dca6be832dd93964c635-dirty
tduigou
parents:
diff changeset
416
6d20407d9a72 planemo upload for repository https://github.com/brsynth/galaxytools commit ccd77691de09b70e3048dca6be832dd93964c635-dirty
tduigou
parents:
diff changeset
417
6d20407d9a72 planemo upload for repository https://github.com/brsynth/galaxytools commit ccd77691de09b70e3048dca6be832dd93964c635-dirty
tduigou
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418 if __name__ == "__main__":
6d20407d9a72 planemo upload for repository https://github.com/brsynth/galaxytools commit ccd77691de09b70e3048dca6be832dd93964c635-dirty
tduigou
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diff changeset
419 logging.basicConfig(
6d20407d9a72 planemo upload for repository https://github.com/brsynth/galaxytools commit ccd77691de09b70e3048dca6be832dd93964c635-dirty
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420 level=logging.INFO,
6d20407d9a72 planemo upload for repository https://github.com/brsynth/galaxytools commit ccd77691de09b70e3048dca6be832dd93964c635-dirty
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421 format="%(asctime)s - %(levelname)s - %(message)s",
6d20407d9a72 planemo upload for repository https://github.com/brsynth/galaxytools commit ccd77691de09b70e3048dca6be832dd93964c635-dirty
tduigou
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422 datefmt="%d-%m-%Y %H:%M",
6d20407d9a72 planemo upload for repository https://github.com/brsynth/galaxytools commit ccd77691de09b70e3048dca6be832dd93964c635-dirty
tduigou
parents:
diff changeset
423 )
6d20407d9a72 planemo upload for repository https://github.com/brsynth/galaxytools commit ccd77691de09b70e3048dca6be832dd93964c635-dirty
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424 main()