Mercurial > repos > tduigou > retrorules
view generate_test.py @ 4:815748762646 draft default tip
planemo upload for repository https://github.com/brsynth/galaxytools commit d7030c1af6fe06a1d45af115756ee775721e39b5
| author | tduigou |
|---|---|
| date | Thu, 02 Oct 2025 14:27:31 +0000 |
| parents | 95b4196b4ded |
| children |
line wrap: on
line source
import hashlib import subprocess import tempfile from typing import List def compute_md5(path: str): hash_md5 = hashlib.md5() with open(path, "rb") as f: for chunk in iter(lambda: f.read(4096), b""): hash_md5.update(chunk) return hash_md5.hexdigest() def run_cmd(subcommand: str, sub_cmd: List): with tempfile.NamedTemporaryFile() as fd: cmd = ["python", "query.py"] cmd.append(subcommand) cmd.append("--output-data-json") cmd.append(fd.name) cmd.extend(sub_cmd) print("Cmd:", " ".join(cmd)) ret = subprocess.run(cmd) if ret.returncode != 0: msg = f"Command failed: {' '.join(cmd)}\n" if ret.stdout: msg += "Stdout:", ret.stdout + "\n" if ret.stderr: msg += "Stderr:", ret.stderr + "\n" raise Exception() return compute_md5(path=fd.name) if __name__ == "__main__": print("=" * 50) print("templates") smarts_str = "[O]-[C](=[O])" cmd = ["--input-smarts-str", smarts_str, "--input-limit-int", "5"] value = run_cmd(subcommand="templates", sub_cmd=cmd) print("Test:", " ".join(cmd), "md5:", value) print("=" * 50) print("templates-summary") template_id = "RR:03-27BC85-19184A-A71018" cmd = ["--input-template-id-str", template_id] value = run_cmd(subcommand="templates-summary", sub_cmd=cmd) print("Test:", " ".join(cmd), "md5:", value) print("=" * 50) print("templates-sources") template_id = "RR:03-27BC85-19184A-A71018" cmd = ["--input-template-id-str", template_id] value = run_cmd(subcommand="templates-sources", sub_cmd=cmd) print("Test:", " ".join(cmd), "md5:", value) print("=" * 50) print("templates-count") smarts_str = "[O]-[C](=[O])" cmd = ["--input-smarts-str", smarts_str] value = run_cmd(subcommand="templates-count", sub_cmd=cmd) print("Test:", " ".join(cmd), "md5:", value) print("=" * 50) """ print("templates-export") smarts_str = "[O]-[C](=[O])" cmd = ["--input-smarts-str", smarts_str] value = run_cmd(subcommand="templates-export", sub_cmd=cmd) print("Test:", " ".join(cmd), "md5:", value) """
