Mercurial > repos > tduigou > rp2biosensor

annotate rp2biosensor.xml @ 0:eaab33f23abf draft

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author tduigou
date Wed, 05 Jan 2022 16:14:32 +0000
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children b7713d32248b
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1 <tool id="rp2biosensor" name="rp2biosensor" version="1.0.1">
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2 <description>Build Sensing-Enabling Metabolic Pathways from RetroPath2.0 output</description>
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3 <requirements>
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4 <requirement type="package" version="1.0.1">rp2biosensor</requirement>
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5 </requirements>
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6 <command detect_errors="exit_code"><![CDATA[
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7 python -m rp2biosensor
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8 '$rp2_results'
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9 --opath '$html_file'
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10 ]]></command>
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11 <inputs>
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12 <param name="rp2_results" type="data" format="csv" label="RetroPath2 output"/>
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13 </inputs>
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14 <outputs>
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15 <data name="html_file" format="html" label="${tool.name} - ${rp2_results.name}"/>
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16 </outputs>
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17 <tests>
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18 <test>
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19 <!-- test 1: check if identical outputs are produced -->
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20 <param name="rp2_results" value="rp2-results_dmax-16.csv" />
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21 <output name="html_file" md5="4abb29e769106e75e68a939764dd2e31"/>
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22 </test>
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23 </tests>
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24 <help><![CDATA[
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25 rp2biosensor
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26 ================
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27
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28 Generate HTML outputs to explore Sensing Enabling Metabolic Pathway from RetroPath2 results.
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29
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30 Input
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31 -----
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32
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33 Required:
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34
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35 * **rp2_results**\ : (string) RetroPath2.0 results.
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36
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37 Output
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38 ------
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39
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40 * **opath**\ : (string) Output path. Default: biosensor.html.
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41
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42 * **o_sbol_dir**\ : (string) Output type. This could be either (i) "dir" which means ouput files will outputted into this directory, or (ii) "file" which means that all files will be embedded into a single HTML page. Default: file.
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43
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44 Project Links
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45 ------------------
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46
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47 * `GitHub <https://github.com/brsynth/rp2biosensor>`_
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48
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49 Version
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50 ----------
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51
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52 1.0.1
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53
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54 Authors
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55 -------
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56
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57 * **Thomas Duigou**
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58
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59 License
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60 -------
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61
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62 * `MIT <https://github.com/brsynth/rp2biosensor/blob/master/LICENSE.md>`_
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63
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64 ]]></help>
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65 </tool>