Mercurial > repos > tduigou > rp2biosensor
changeset 0:eaab33f23abf draft
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
| author | tduigou |
|---|---|
| date | Wed, 05 Jan 2022 16:14:32 +0000 |
| parents | |
| children | b7713d32248b |
| files | rp2biosensor.xml test-data/rp2-results_dmax-16.csv |
| diffstat | 2 files changed, 430 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/rp2biosensor.xml Wed Jan 05 16:14:32 2022 +0000 @@ -0,0 +1,65 @@ +<tool id="rp2biosensor" name="rp2biosensor" version="1.0.1"> + <description>Build Sensing-Enabling Metabolic Pathways from RetroPath2.0 output</description> + <requirements> + <requirement type="package" version="1.0.1">rp2biosensor</requirement> + </requirements> + <command detect_errors="exit_code"><![CDATA[ + python -m rp2biosensor + '$rp2_results' + --opath '$html_file' + ]]></command> + <inputs> + <param name="rp2_results" type="data" format="csv" label="RetroPath2 output"/> + </inputs> + <outputs> + <data name="html_file" format="html" label="${tool.name} - ${rp2_results.name}"/> + </outputs> + <tests> + <test> + <!-- test 1: check if identical outputs are produced --> + <param name="rp2_results" value="rp2-results_dmax-16.csv" /> + <output name="html_file" md5="4abb29e769106e75e68a939764dd2e31"/> + </test> + </tests> + <help><![CDATA[ +rp2biosensor +================ + +Generate HTML outputs to explore Sensing Enabling Metabolic Pathway from RetroPath2 results. + +Input +----- + +Required: + +* **rp2_results**\ : (string) RetroPath2.0 results. + +Output +------ + +* **opath**\ : (string) Output path. Default: biosensor.html. + +* **o_sbol_dir**\ : (string) Output type. This could be either (i) "dir" which means ouput files will outputted into this directory, or (ii) "file" which means that all files will be embedded into a single HTML page. Default: file. + +Project Links +------------------ + +* `GitHub <https://github.com/brsynth/rp2biosensor>`_ + +Version +---------- + +1.0.1 + +Authors +------- + +* **Thomas Duigou** + +License +------- + +* `MIT <https://github.com/brsynth/rp2biosensor/blob/master/LICENSE.md>`_ + + ]]></help> +</tool> \ No newline at end of file
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