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comparison rp2biosensor.xml @ 0:eaab33f23abf draft

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"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
author tduigou
date Wed, 05 Jan 2022 16:14:32 +0000
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1 <tool id="rp2biosensor" name="rp2biosensor" version="1.0.1">
2 <description>Build Sensing-Enabling Metabolic Pathways from RetroPath2.0 output</description>
3 <requirements>
4 <requirement type="package" version="1.0.1">rp2biosensor</requirement>
5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[
7 python -m rp2biosensor
8 '$rp2_results'
9 --opath '$html_file'
10 ]]></command>
11 <inputs>
12 <param name="rp2_results" type="data" format="csv" label="RetroPath2 output"/>
13 </inputs>
14 <outputs>
15 <data name="html_file" format="html" label="${tool.name} - ${rp2_results.name}"/>
16 </outputs>
17 <tests>
18 <test>
19 <!-- test 1: check if identical outputs are produced -->
20 <param name="rp2_results" value="rp2-results_dmax-16.csv" />
21 <output name="html_file" md5="4abb29e769106e75e68a939764dd2e31"/>
22 </test>
23 </tests>
24 <help><![CDATA[
25 rp2biosensor
26 ================
27
28 Generate HTML outputs to explore Sensing Enabling Metabolic Pathway from RetroPath2 results.
29
30 Input
31 -----
32
33 Required:
34
35 * **rp2_results**\ : (string) RetroPath2.0 results.
36
37 Output
38 ------
39
40 * **opath**\ : (string) Output path. Default: biosensor.html.
41
42 * **o_sbol_dir**\ : (string) Output type. This could be either (i) "dir" which means ouput files will outputted into this directory, or (ii) "file" which means that all files will be embedded into a single HTML page. Default: file.
43
44 Project Links
45 ------------------
46
47 * `GitHub <https://github.com/brsynth/rp2biosensor>`_
48
49 Version
50 ----------
51
52 1.0.1
53
54 Authors
55 -------
56
57 * **Thomas Duigou**
58
59 License
60 -------
61
62 * `MIT <https://github.com/brsynth/rp2biosensor/blob/master/LICENSE.md>`_
63
64 ]]></help>
65 </tool>