Mercurial > repos > tduigou > rpranker

annotate test-data/rp_001_0001.xml @ 0:e95370d2e5f9 draft

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"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
author tduigou
date Mon, 13 Dec 2021 18:19:24 +0000
parents
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0
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1 <?xml version="1.0" encoding="UTF-8"?>
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2 <sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:groups="http://www.sbml.org/sbml/level3/version1/groups/version1" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" level="3" version="1" groups:required="false" fbc:required="false">
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3 <model metaid="a03e1bf0f20b54a66f7b4ce262ea6b0f7579c0a1e47144a649b9e2e711f6b3ed" id="RP_model_001_0001" name="001_0001" substanceUnits="mole" timeUnits="second" extentUnits="mole" fbc:strict="true">
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4 <listOfCompartments>
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5 <compartment metaid="_2e7d2c03a9507ae265ecf5b5356885a53393a2029d241394997265a1a25aefc6" sboTerm="SBO:0000290" id="c" name="cytosol" size="1" constant="true">
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6 <annotation>
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7 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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8 <rdf:Description rdf:about="#_2e7d2c03a9507ae265ecf5b5356885a53393a2029d241394997265a1a25aefc6">
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9 <bqbiol:is>
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10 <rdf:Bag>
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11 <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c"/>
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12 <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c_c"/>
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13 <rdf:li rdf:resource="http://identifiers.org/metanetx.compartment/MNXC3"/>
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14 <rdf:li rdf:resource="http://identifiers.org/seed/c"/>
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15 <rdf:li rdf:resource="http://identifiers.org/seed/c0"/>
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16 <rdf:li rdf:resource="http://identifiers.org/seed/cytosol"/>
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17 <rdf:li rdf:resource="http://identifiers.org/name/cytosol"/>
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18 </rdf:Bag>
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19 </bqbiol:is>
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20 </rdf:Description>
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21 </rdf:RDF>
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22 </annotation>
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23 </compartment>
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24 </listOfCompartments>
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25 <listOfSpecies>
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26 <species metaid="_2f4b2d21d00b43a266620e821de533b08c3e42ff09ca008f915ca4400eb7d8c4" id="MNXM8975" name="MNXM8975" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
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27 <annotation>
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28 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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29 <rdf:Description rdf:about="#_2f4b2d21d00b43a266620e821de533b08c3e42ff09ca008f915ca4400eb7d8c4">
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30 <bqbiol:is>
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31 <rdf:Bag/>
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32 </bqbiol:is>
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33 </rdf:Description>
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34 <rdf:BRSynth rdf:about="#_2f4b2d21d00b43a266620e821de533b08c3e42ff09ca008f915ca4400eb7d8c4">
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35 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
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36 <brsynth:smiles/>
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37 <brsynth:inchi/>
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38 <brsynth:inchikey/>
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39 <brsynth:fba_biomass_shadow_price>
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40 <brsynth:value value="None"/>
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41 </brsynth:fba_biomass_shadow_price>
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42 <brsynth:fba_fraction_shadow_price>
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43 <brsynth:value value="None"/>
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44 </brsynth:fba_fraction_shadow_price>
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45 <brsynth:thermo_standard_dg_formation>
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46 <brsynth:value value="-2261.3806478863044"/>
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47 <brsynth:units value="kilojoule / mole"/>
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48 </brsynth:thermo_standard_dg_formation>
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49 </brsynth:brsynth>
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50 </rdf:BRSynth>
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51 </rdf:RDF>
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52 </annotation>
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53 </species>
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54 <species metaid="_61841f05183ff06dbe77a0e01f6d73d7a890997d823ac18d9fd56bac3d4bcc39" id="MNXM24" name="MNXM24" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
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55 <annotation>
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56 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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57 <rdf:Description rdf:about="#_61841f05183ff06dbe77a0e01f6d73d7a890997d823ac18d9fd56bac3d4bcc39">
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58 <bqbiol:is>
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59 <rdf:Bag/>
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60 </bqbiol:is>
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61 </rdf:Description>
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62 <rdf:BRSynth rdf:about="#_61841f05183ff06dbe77a0e01f6d73d7a890997d823ac18d9fd56bac3d4bcc39">
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63 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
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64 <brsynth:smiles/>
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65 <brsynth:inchi/>
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66 <brsynth:inchikey/>
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67 <brsynth:fba_biomass_shadow_price>
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68 <brsynth:value value="None"/>
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69 </brsynth:fba_biomass_shadow_price>
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70 <brsynth:fba_fraction_shadow_price>
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71 <brsynth:value value="None"/>
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72 </brsynth:fba_fraction_shadow_price>
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73 <brsynth:thermo_standard_dg_formation>
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74 <brsynth:value value="-2256.1898491337233"/>
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75 <brsynth:units value="kilojoule / mole"/>
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76 </brsynth:thermo_standard_dg_formation>
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77 </brsynth:brsynth>
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78 </rdf:BRSynth>
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79 </rdf:RDF>
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80 </annotation>
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81 </species>
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82 <species metaid="_47d72a86d31940edf1cc42c7a7361a7a96211dc2a6679326b8ad27a7e216ada0" id="MNXM83" name="MNXM83" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
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83 <annotation>
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84 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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85 <rdf:Description rdf:about="#_47d72a86d31940edf1cc42c7a7361a7a96211dc2a6679326b8ad27a7e216ada0">
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86 <bqbiol:is>
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87 <rdf:Bag/>
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88 </bqbiol:is>
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89 </rdf:Description>
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90 <rdf:BRSynth rdf:about="#_47d72a86d31940edf1cc42c7a7361a7a96211dc2a6679326b8ad27a7e216ada0">
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91 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
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92 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])([H])C(=C([H])[H])C([H])([H])[H]"/>
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93 <brsynth:inchi value="InChI=1S/C5H12O7P2/c1-5(2)3-4-11-14(9,10)12-13(6,7)8/h1,3-4H2,2H3,(H,9,10)(H2,6,7,8)"/>
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94 <brsynth:inchikey value="NUHSROFQTUXZQQ-UHFFFAOYSA-N"/>
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95 <brsynth:fba_biomass_shadow_price>
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tduigou
parents:
diff changeset
96 <brsynth:value value="None"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
97 </brsynth:fba_biomass_shadow_price>
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tduigou
parents:
diff changeset
98 <brsynth:fba_fraction_shadow_price>
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tduigou
parents:
diff changeset
99 <brsynth:value value="None"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
100 </brsynth:fba_fraction_shadow_price>
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tduigou
parents:
diff changeset
101 <brsynth:thermo_standard_dg_formation>
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tduigou
parents:
diff changeset
102 <brsynth:value value="-1828.3274439664424"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
103 <brsynth:units value="kilojoule / mole"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
104 </brsynth:thermo_standard_dg_formation>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
105 </brsynth:brsynth>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
106 </rdf:BRSynth>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
107 </rdf:RDF>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
108 </annotation>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
109 </species>
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parents:
diff changeset
110 <species metaid="_6817bb5f7133f50744b232330f1f3009343f785b8f77602ce5f44cdd9458f002" id="TARGET_0000000001" name="TARGET_0000000001" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
111 <annotation>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
112 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
113 <rdf:Description rdf:about="#_6817bb5f7133f50744b232330f1f3009343f785b8f77602ce5f44cdd9458f002">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
114 <bqbiol:is>
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parents:
diff changeset
115 <rdf:Bag/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
116 </bqbiol:is>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
117 </rdf:Description>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
118 <rdf:BRSynth rdf:about="#_6817bb5f7133f50744b232330f1f3009343f785b8f77602ce5f44cdd9458f002">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
119 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
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120 <brsynth:smiles value="[H]C(=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])=C(C([H])=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])([H])[H]"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
121 <brsynth:inchi value="InChI=1S/C40H56/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,15-22,25-32H,13-14,23-24H2,1-10H3"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
122 <brsynth:inchikey value="OAIJSZIZWZSQBC-UHFFFAOYSA-N"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
123 <brsynth:fba_biomass_shadow_price>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
124 <brsynth:value value="-0.0"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
125 </brsynth:fba_biomass_shadow_price>
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parents:
diff changeset
126 <brsynth:fba_fraction_shadow_price>
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parents:
diff changeset
127 <brsynth:value value="-1.0"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
128 </brsynth:fba_fraction_shadow_price>
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parents:
diff changeset
129 <brsynth:thermo_standard_dg_formation>
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parents:
diff changeset
130 <brsynth:value value="1245.5794452419402"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
131 <brsynth:units value="kilojoule / mole"/>
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parents:
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132 </brsynth:thermo_standard_dg_formation>
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parents:
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133 </brsynth:brsynth>
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parents:
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134 </rdf:BRSynth>
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parents:
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135 </rdf:RDF>
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parents:
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136 </annotation>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
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137 </species>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
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138 <species metaid="a6e267be12defb7184259624f5adc519108c6c6adfe6be13f64b649567cb6df1" id="MNXM11" name="MNXM11" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
139 <annotation>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
140 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
141 <rdf:Description rdf:about="#a6e267be12defb7184259624f5adc519108c6c6adfe6be13f64b649567cb6df1">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
142 <bqbiol:is>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
143 <rdf:Bag/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
144 </bqbiol:is>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
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145 </rdf:Description>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
146 <rdf:BRSynth rdf:about="#a6e267be12defb7184259624f5adc519108c6c6adfe6be13f64b649567cb6df1">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
147 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
148 <brsynth:smiles value="O=P(O)(O)OP(=O)(O)O"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
149 <brsynth:inchi value="InChI=1S/H4O7P2/c1-8(2,3)7-9(4,5)6/h(H2,1,2,3)(H2,4,5,6)"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
150 <brsynth:inchikey value="XPPKVPWEQAFLFU-UHFFFAOYSA-N"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
151 <brsynth:fba_biomass_shadow_price>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
152 <brsynth:value value="None"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
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153 </brsynth:fba_biomass_shadow_price>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
154 <brsynth:fba_fraction_shadow_price>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
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155 <brsynth:value value="None"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
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156 </brsynth:fba_fraction_shadow_price>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
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157 <brsynth:thermo_standard_dg_formation>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
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158 <brsynth:value value="-1966.8036657706114"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
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159 <brsynth:units value="kilojoule / mole"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
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160 </brsynth:thermo_standard_dg_formation>
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parents:
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161 </brsynth:brsynth>
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parents:
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162 </rdf:BRSynth>
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parents:
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163 </rdf:RDF>
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parents:
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164 </annotation>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
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165 </species>
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parents:
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166 <species metaid="b0098569a07f786a6e9b2294639668cd4ee564dd642a38bdf429c4c6bb560b46" id="CMPD_0000000001" name="CMPD_0000000001" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
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167 <annotation>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
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168 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
169 <rdf:Description rdf:about="#b0098569a07f786a6e9b2294639668cd4ee564dd642a38bdf429c4c6bb560b46">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
170 <bqbiol:is>
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parents:
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171 <rdf:Bag/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
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172 </bqbiol:is>
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parents:
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173 </rdf:Description>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
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174 <rdf:BRSynth rdf:about="#b0098569a07f786a6e9b2294639668cd4ee564dd642a38bdf429c4c6bb560b46">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
175 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
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parents:
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176 <brsynth:smiles value="[H]C(=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
177 <brsynth:inchi value="InChI=1S/C40H64/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,19-22,27-30H,13-18,23-26,31-32H2,1-10H3"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
178 <brsynth:inchikey value="YVLPJIGOMTXXLP-UHFFFAOYSA-N"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
179 <brsynth:fba_biomass_shadow_price>
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parents:
diff changeset
180 <brsynth:value value="-0.0"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
181 </brsynth:fba_biomass_shadow_price>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
182 <brsynth:fba_fraction_shadow_price>
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parents:
diff changeset
183 <brsynth:value value="-1.0"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
184 </brsynth:fba_fraction_shadow_price>
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parents:
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185 <brsynth:thermo_standard_dg_formation>
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parents:
diff changeset
186 <brsynth:value value="936.7141451846444"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
187 <brsynth:units value="kilojoule / mole"/>
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parents:
diff changeset
188 </brsynth:thermo_standard_dg_formation>
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tduigou
parents:
diff changeset
189 </brsynth:brsynth>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
190 </rdf:BRSynth>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
191 </rdf:RDF>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
192 </annotation>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
193 </species>
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parents:
diff changeset
194 <species metaid="_2c27bb432be6149f648dcec0e702fd9bdf6449fb9f730bd86eeb0b63b93d8858" id="CMPD_0000000003" name="CMPD_0000000003" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
195 <annotation>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
196 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
197 <rdf:Description rdf:about="#_2c27bb432be6149f648dcec0e702fd9bdf6449fb9f730bd86eeb0b63b93d8858">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
198 <bqbiol:is>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
199 <rdf:Bag/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
200 </bqbiol:is>
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tduigou
parents:
diff changeset
201 </rdf:Description>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
202 <rdf:BRSynth rdf:about="#_2c27bb432be6149f648dcec0e702fd9bdf6449fb9f730bd86eeb0b63b93d8858">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
203 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
204 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
205 <brsynth:inchi value="InChI=1S/C20H36O7P2/c1-17(2)9-6-10-18(3)11-7-12-19(4)13-8-14-20(5)15-16-26-29(24,25)27-28(21,22)23/h9,11,13,15H,6-8,10,12,14,16H2,1-5H3,(H,24,25)(H2,21,22,23)"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
206 <brsynth:inchikey value="OINNEUNVOZHBOX-UHFFFAOYSA-N"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
207 <brsynth:fba_biomass_shadow_price>
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parents:
diff changeset
208 <brsynth:value value="-0.0018808381539569818"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
209 </brsynth:fba_biomass_shadow_price>
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parents:
diff changeset
210 <brsynth:fba_fraction_shadow_price>
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tduigou
parents:
diff changeset
211 <brsynth:value value="-0.9919678714859438"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
212 </brsynth:fba_fraction_shadow_price>
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tduigou
parents:
diff changeset
213 <brsynth:thermo_standard_dg_formation>
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parents:
diff changeset
214 <brsynth:value value="-1495.8281099920857"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
215 <brsynth:units value="kilojoule / mole"/>
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parents:
diff changeset
216 </brsynth:thermo_standard_dg_formation>
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parents:
diff changeset
217 </brsynth:brsynth>
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parents:
diff changeset
218 </rdf:BRSynth>
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parents:
diff changeset
219 </rdf:RDF>
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parents:
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220 </annotation>
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tduigou
parents:
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221 </species>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
222 <species metaid="_212c5940beac5625a2636d3d14fbc63cc5a8107d9dd39020ac544f296debabcc" id="MNXM132" name="MNXM132" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
223 <annotation>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
224 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
225 <rdf:Description rdf:about="#_212c5940beac5625a2636d3d14fbc63cc5a8107d9dd39020ac544f296debabcc">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
226 <bqbiol:is>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
227 <rdf:Bag/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
228 </bqbiol:is>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
229 </rdf:Description>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
230 <rdf:BRSynth rdf:about="#_212c5940beac5625a2636d3d14fbc63cc5a8107d9dd39020ac544f296debabcc">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
231 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
232 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
233 <brsynth:inchi value="InChI=1S/C5H12O7P2/c1-5(2)3-4-11-14(9,10)12-13(6,7)8/h3H,4H2,1-2H3,(H,9,10)(H2,6,7,8)"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
234 <brsynth:inchikey value="CBIDRCWHNCKSTO-UHFFFAOYSA-N"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
235 <brsynth:fba_biomass_shadow_price>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
236 <brsynth:value value="None"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
237 </brsynth:fba_biomass_shadow_price>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
238 <brsynth:fba_fraction_shadow_price>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
239 <brsynth:value value="None"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
240 </brsynth:fba_fraction_shadow_price>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
241 <brsynth:thermo_standard_dg_formation>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
242 <brsynth:value value="-1833.2298341488033"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
243 <brsynth:units value="kilojoule / mole"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
244 </brsynth:thermo_standard_dg_formation>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
245 </brsynth:brsynth>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
246 </rdf:BRSynth>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
247 </rdf:RDF>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
248 </annotation>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
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249 </species>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
250 </listOfSpecies>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
251 <listOfParameters>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
252 <parameter metaid="dc937b59892604f5a86ac96936cd7ff09e25f18ae6b758e8014a24c7fa039e91" sboTerm="SBO:0000625" id="BRS_FBC_10000_0" value="10000" constant="true"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
253 <parameter metaid="dc937b59892604f5a86ac96936cd7ff09e25f18ae6b758e8014a24c7fa039e91" sboTerm="SBO:0000625" id="BRS_FBC_0_0" value="0" constant="true"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
254 </listOfParameters>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
255 <listOfReactions>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
256 <reaction metaid="_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4" sboTerm="SBO:0000176" id="rxn_1" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0_0" fbc:upperFluxBound="BRS_FBC_10000_0">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
257 <annotation>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
258 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
259 <rdf:Description rdf:about="#_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
260 <bqbiol:is>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
261 <rdf:Bag>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
262 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.29"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
263 </rdf:Bag>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
264 </bqbiol:is>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
265 </rdf:Description>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
266 <rdf:BRSynth rdf:about="#_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
267 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
268 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H].[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])([H])C(=C([H])[H])C([H])([H])[H]&gt;&gt;[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H].O=P(O)(O)OP(=O)(O)O.O=P(O)(O)OP(=O)(O)O.O=P(O)(O)OP(=O)(O)O"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
269 <brsynth:rp2_transfo_id value="TRS_0_2_739"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
270 <brsynth:rule_ids>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
271 <brsynth:RR-02-90bcfd187709eb1b-14-F/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
272 </brsynth:rule_ids>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
273 <brsynth:tmpl_rxn_ids>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
274 <brsynth:MNXR132232/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
275 </brsynth:tmpl_rxn_ids>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
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parents:
diff changeset
276 <brsynth:rule_score value="0.5706379442030705"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
277 <brsynth:idx_in_path value="1"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
278 <brsynth:selenzy/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
279 <brsynth:fba_biomass>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
280 <brsynth:value value="0.0"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
281 <brsynth:units value="gDW / gDW / hour"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
282 </brsynth:fba_biomass>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
283 <brsynth:fba_fraction>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
284 <brsynth:value value="0.9388532834589001"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
285 <brsynth:units value="milimole / gDW / hour"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
286 </brsynth:fba_fraction>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
287 <brsynth:thermo_dG0_prime>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
288 <brsynth:value value="-3015.9215101389987"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
289 <brsynth:error value="7.250256007547839"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
290 <brsynth:units value="kilojoule / mole"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
291 </brsynth:thermo_dG0_prime>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
292 <brsynth:thermo_dGm_prime>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
293 <brsynth:value value="-3050.151185208441"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
294 <brsynth:error value="7.250256007547839"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
295 <brsynth:units value="kilojoule / mole"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
296 </brsynth:thermo_dGm_prime>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
297 <brsynth:thermo_dG_prime>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
298 <brsynth:value value="-3015.9215101389987"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
299 <brsynth:error value="7.250256007547839"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
300 <brsynth:units value="kilojoule / mole"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
301 </brsynth:thermo_dG_prime>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
302 <brsynth:thermo_dG>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
303 <brsynth:value value="-3734.681829188674"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
304 <brsynth:error value="7.250256007547839"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
305 <brsynth:units value="kilojoule / mole"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
306 </brsynth:thermo_dG>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
307 </brsynth:brsynth>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
308 </rdf:BRSynth>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
309 </rdf:RDF>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
310 </annotation>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
311 <listOfReactants>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
312 <speciesReference species="MNXM132" stoichiometry="1" constant="true"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
313 <speciesReference species="MNXM83" stoichiometry="1" constant="true"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
314 </listOfReactants>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
315 <listOfProducts>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
316 <speciesReference species="CMPD_0000000003" stoichiometry="1" constant="true"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
317 <speciesReference species="MNXM11" stoichiometry="3" constant="true"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
318 </listOfProducts>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
319 </reaction>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
320 <reaction metaid="c9c2d56fd0ad9d5b8cd80acad4b5df22945ab4de50db7b24db52a91a7560c3ff" sboTerm="SBO:0000176" id="rxn_2" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0_0" fbc:upperFluxBound="BRS_FBC_10000_0">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
321 <annotation>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
322 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
323 <rdf:Description rdf:about="#c9c2d56fd0ad9d5b8cd80acad4b5df22945ab4de50db7b24db52a91a7560c3ff">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
324 <bqbiol:is>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
325 <rdf:Bag>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
326 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.96"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
327 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.99"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
328 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.32"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
329 </rdf:Bag>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
330 </bqbiol:is>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
331 </rdf:Description>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
332 <rdf:BRSynth rdf:about="#c9c2d56fd0ad9d5b8cd80acad4b5df22945ab4de50db7b24db52a91a7560c3ff">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
333 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
334 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]&gt;&gt;[H]C(=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H].O=P(O)(O)OP(=O)(O)O.O=P(O)(O)OP(=O)(O)O"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
335 <brsynth:rp2_transfo_id value="TRS_0_1_9"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
336 <brsynth:rule_ids>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
337 <brsynth:RR-02-bedda4e2f5001e0c-14-F/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
338 </brsynth:rule_ids>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
339 <brsynth:tmpl_rxn_ids>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
340 <brsynth:MNXR111250/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
341 <brsynth:MNXR111499/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
342 <brsynth:MNXR113543/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
343 <brsynth:MNXR118024/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
344 <brsynth:MNXR139549/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
345 </brsynth:tmpl_rxn_ids>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
346 <brsynth:rule_score value="0.5518755963407151"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
347 <brsynth:idx_in_path value="2"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
348 <brsynth:selenzy/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
349 <brsynth:fba_biomass>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
350 <brsynth:value value="0.0"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
351 <brsynth:units value="gDW / gDW / hour"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
352 </brsynth:fba_biomass>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
353 <brsynth:fba_fraction>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
354 <brsynth:value value="0.9388532834589001"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
355 <brsynth:units value="milimole / gDW / hour"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
356 </brsynth:fba_fraction>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
357 <brsynth:thermo_dG0_prime>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
358 <brsynth:value value="-119.13360567395966"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
359 <brsynth:error value="11.000567449695138"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
360 <brsynth:units value="kilojoule / mole"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
361 </brsynth:thermo_dG0_prime>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
362 <brsynth:thermo_dGm_prime>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
363 <brsynth:value value="-153.36328074340173"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
364 <brsynth:error value="11.000567449695138"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
365 <brsynth:units value="kilojoule / mole"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
366 </brsynth:thermo_dGm_prime>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
367 <brsynth:thermo_dG_prime>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
368 <brsynth:value value="-119.13360567395966"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
369 <brsynth:error value="11.000567449695138"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
370 <brsynth:units value="kilojoule / mole"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
371 </brsynth:thermo_dG_prime>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
372 <brsynth:thermo_dG>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
373 <brsynth:value value="-1501.0650763644926"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
374 <brsynth:error value="11.000567449695138"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
375 <brsynth:units value="kilojoule / mole"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
376 </brsynth:thermo_dG>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
377 </brsynth:brsynth>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
378 </rdf:BRSynth>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
379 </rdf:RDF>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
380 </annotation>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
381 <listOfReactants>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
382 <speciesReference species="CMPD_0000000003" stoichiometry="1" constant="true"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
383 </listOfReactants>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
384 <listOfProducts>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
385 <speciesReference species="CMPD_0000000001" stoichiometry="1" constant="true"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
386 <speciesReference species="MNXM11" stoichiometry="2" constant="true"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
387 </listOfProducts>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
388 </reaction>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
389 <reaction metaid="_376841fa42ba139764a5509b9d817e2e540d0e228582c970025c73ae1ee77c0d" sboTerm="SBO:0000176" id="rxn_3" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0_0" fbc:upperFluxBound="BRS_FBC_10000_0">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
390 <annotation>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
391 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
392 <rdf:Description rdf:about="#_376841fa42ba139764a5509b9d817e2e540d0e228582c970025c73ae1ee77c0d">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
393 <bqbiol:is>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
394 <rdf:Bag>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
395 <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.99.31"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
396 </rdf:Bag>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
397 </bqbiol:is>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
398 </rdf:Description>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
399 <rdf:BRSynth rdf:about="#_376841fa42ba139764a5509b9d817e2e540d0e228582c970025c73ae1ee77c0d">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
400 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
401 <brsynth:smiles value="[H]C(=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]&gt;&gt;[H]C(=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])=C(C([H])=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])([H])[H]"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
402 <brsynth:rp2_transfo_id value="TRS_0_0_1"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
403 <brsynth:rule_ids>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
404 <brsynth:RR-02-ae41ec5771136ea5-14-F/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
405 </brsynth:rule_ids>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
406 <brsynth:tmpl_rxn_ids>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
407 <brsynth:MNXR113128/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
408 </brsynth:tmpl_rxn_ids>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
409 <brsynth:rule_score value="0.7358363677022237"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
410 <brsynth:idx_in_path value="3"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
411 <brsynth:selenzy/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
412 <brsynth:fba_biomass>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
413 <brsynth:value value="0.0"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
414 <brsynth:units value="gDW / gDW / hour"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
415 </brsynth:fba_biomass>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
416 <brsynth:fba_fraction>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
417 <brsynth:value value="0.9388532834589001"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
418 <brsynth:units value="milimole / gDW / hour"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
419 </brsynth:fba_fraction>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
420 <brsynth:thermo_dG0_prime>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
421 <brsynth:value value="1191.8613577748536"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
422 <brsynth:error value="44.93683979991009"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
423 <brsynth:units value="kilojoule / mole"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
424 </brsynth:thermo_dG0_prime>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
425 <brsynth:thermo_dGm_prime>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
426 <brsynth:value value="1191.8613577748536"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
427 <brsynth:error value="44.93683979991009"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
428 <brsynth:units value="kilojoule / mole"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
429 </brsynth:thermo_dGm_prime>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
430 <brsynth:thermo_dG_prime>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
431 <brsynth:value value="1191.8613577748536"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
432 <brsynth:error value="44.93683979991009"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
433 <brsynth:units value="kilojoule / mole"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
434 </brsynth:thermo_dG_prime>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
435 <brsynth:thermo_dG>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
436 <brsynth:value value="329.6284950676197"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
437 <brsynth:error value="44.93683979991009"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
438 <brsynth:units value="kilojoule / mole"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
439 </brsynth:thermo_dG>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
440 </brsynth:brsynth>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
441 </rdf:BRSynth>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
442 </rdf:RDF>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
443 </annotation>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
444 <listOfReactants>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
445 <speciesReference species="CMPD_0000000001" stoichiometry="1" constant="true"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
446 <speciesReference species="MNXM8975" stoichiometry="4" constant="true"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
447 </listOfReactants>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
448 <listOfProducts>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
449 <speciesReference species="MNXM24" stoichiometry="4" constant="true"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
450 <speciesReference species="TARGET_0000000001" stoichiometry="1" constant="true"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
451 </listOfProducts>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
452 </reaction>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
453 </listOfReactions>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
454 <groups:listOfGroups>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
455 <groups:group metaid="_93eef40c447d295fa61df9270c5fd909ec2ba7ee9883090552c0466873cd4299" groups:id="rp_pathway" groups:kind="collection">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
456 <annotation>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
457 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
458 <rdf:BRSynth rdf:about="#_93eef40c447d295fa61df9270c5fd909ec2ba7ee9883090552c0466873cd4299">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
459 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
460 <brsynth:fba_biomass>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
461 <brsynth:value value="0.87699721442697"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
462 <brsynth:units value="gDW / gDW / hour"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
463 </brsynth:fba_biomass>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
464 <brsynth:fba_fraction>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
465 <brsynth:value value="0.9388532834589001"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
466 <brsynth:units value="milimole / gDW / hour"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
467 </brsynth:fba_fraction>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
468 <brsynth:thermo_dG0_prime>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
469 <brsynth:value value="-1943.1937580381036"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
470 <brsynth:error value="48.85909247104981"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
471 <brsynth:units value="kilojoule / mole"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
472 </brsynth:thermo_dG0_prime>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
473 <brsynth:thermo_dGm_prime>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
474 <brsynth:value value="-2011.6531081769876"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
475 <brsynth:error value="48.85909247104981"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
476 <brsynth:units value="kilojoule / mole"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
477 </brsynth:thermo_dGm_prime>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
478 <brsynth:thermo_dG_prime>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
479 <brsynth:value value="-1943.1937580381036"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
480 <brsynth:error value="48.85909247104981"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
481 <brsynth:units value="kilojoule / mole"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
482 </brsynth:thermo_dG_prime>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
483 <brsynth:thermo_dG>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
484 <brsynth:value value="-4906.1184104855465"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
485 <brsynth:error value="48.85909247104981"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
486 <brsynth:units value="kilojoule / mole"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
487 </brsynth:thermo_dG>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
488 <brsynth:global_score value="0.9850856959819794"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
489 </brsynth:brsynth>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
490 </rdf:BRSynth>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
491 </rdf:RDF>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
492 </annotation>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
493 <groups:listOfMembers>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
494 <groups:member groups:idRef="rxn_1"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
495 <groups:member groups:idRef="rxn_2"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
496 <groups:member groups:idRef="rxn_3"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
497 </groups:listOfMembers>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
498 </groups:group>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
499 <groups:group metaid="_613b064337553014ede418c67180137a4561ff11b13f3bfa1a2765ef37ac375a" groups:id="rp_intermediate_species" groups:kind="collection">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
500 <annotation>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
501 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
502 <rdf:BRSynth rdf:about="#_613b064337553014ede418c67180137a4561ff11b13f3bfa1a2765ef37ac375a">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
503 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
504 </rdf:BRSynth>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
505 </rdf:RDF>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
506 </annotation>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
507 <groups:listOfMembers>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
508 <groups:member groups:idRef="CMPD_0000000001"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
509 <groups:member groups:idRef="CMPD_0000000003"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
510 </groups:listOfMembers>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
511 </groups:group>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
512 <groups:group metaid="_564fce39b23c6cf87d12dc2c612448384fd2cd980fe3fc07829e2ef802645579" groups:id="rp_trunk_species" groups:kind="collection">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
513 <annotation>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
514 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
515 <rdf:BRSynth rdf:about="#_564fce39b23c6cf87d12dc2c612448384fd2cd980fe3fc07829e2ef802645579">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
516 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
517 </rdf:BRSynth>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
518 </rdf:RDF>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
519 </annotation>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
520 <groups:listOfMembers>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
521 <groups:member groups:idRef="MNXM83"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
522 <groups:member groups:idRef="TARGET_0000000001"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
523 <groups:member groups:idRef="CMPD_0000000001"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
524 <groups:member groups:idRef="CMPD_0000000003"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
525 <groups:member groups:idRef="MNXM132"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
526 </groups:listOfMembers>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
527 </groups:group>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
528 <groups:group metaid="_9e3154173c97366b3980dd1642e1e35d0bdfc3274abc744e89ecb518bcd48378" groups:id="rp_completed_species" groups:kind="collection">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
529 <annotation>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
530 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
531 <rdf:BRSynth rdf:about="#_9e3154173c97366b3980dd1642e1e35d0bdfc3274abc744e89ecb518bcd48378">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
532 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
533 </rdf:BRSynth>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
534 </rdf:RDF>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
535 </annotation>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
536 <groups:listOfMembers>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
537 <groups:member groups:idRef="MNXM8975"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
538 <groups:member groups:idRef="MNXM11"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
539 <groups:member groups:idRef="MNXM24"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
540 </groups:listOfMembers>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
541 </groups:group>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
542 <groups:group metaid="_58b3b59284e0d918d6d3f3bcadc2d757726da7594cd899cad4e745836ac967a3" groups:id="rp_sink_species" groups:kind="collection">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
543 <annotation>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
544 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
545 <rdf:BRSynth rdf:about="#_58b3b59284e0d918d6d3f3bcadc2d757726da7594cd899cad4e745836ac967a3">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
546 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
547 </rdf:BRSynth>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
548 </rdf:RDF>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
549 </annotation>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
550 <groups:listOfMembers>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
551 <groups:member groups:idRef="MNXM83"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
552 <groups:member groups:idRef="MNXM11"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
553 <groups:member groups:idRef="MNXM132"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
554 </groups:listOfMembers>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
555 </groups:group>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
556 <groups:group metaid="a0f48a6fe4f833a3d15abd7ee5b944b97d629570ac09588e9fb6fdf6196ab189" groups:id="rp_fba_ignored_species" groups:kind="collection">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
557 <annotation>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
558 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
559 <rdf:BRSynth rdf:about="#a0f48a6fe4f833a3d15abd7ee5b944b97d629570ac09588e9fb6fdf6196ab189">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
560 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
561 </rdf:BRSynth>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
562 </rdf:RDF>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
563 </annotation>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
564 <groups:listOfMembers>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
565 <groups:member groups:idRef="MNXM8975"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
566 <groups:member groups:idRef="MNXM24"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
567 </groups:listOfMembers>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
568 </groups:group>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
569 <groups:group metaid="fb9b29ba20af773fed953f1d6726905a453f235c9a4baa7217f02760bc2057f8" groups:id="rp_thermo_substituted_species" groups:kind="collection">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
570 <annotation>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
571 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
572 <rdf:BRSynth rdf:about="#fb9b29ba20af773fed953f1d6726905a453f235c9a4baa7217f02760bc2057f8">
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
573 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
574 </rdf:BRSynth>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
575 </rdf:RDF>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
576 </annotation>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
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577 <groups:listOfMembers>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
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578 <groups:member groups:idRef="MNXM8975"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
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579 <groups:member groups:idRef="TARGET_0000000001"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
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580 <groups:member groups:idRef="MNXM24"/>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
581 </groups:listOfMembers>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
582 </groups:group>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
583 </groups:listOfGroups>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
diff changeset
584 </model>
e95370d2e5f9 "planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
tduigou
parents:
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585 </sbml>