Mercurial > repos > tduigou > rpranker

comparison test-data/rp_001_0001.xml @ 0:e95370d2e5f9 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
author tduigou
date Mon, 13 Dec 2021 18:19:24 +0000
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:e95370d2e5f9
1 <?xml version="1.0" encoding="UTF-8"?>
2 <sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:groups="http://www.sbml.org/sbml/level3/version1/groups/version1" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" level="3" version="1" groups:required="false" fbc:required="false">
3 <model metaid="a03e1bf0f20b54a66f7b4ce262ea6b0f7579c0a1e47144a649b9e2e711f6b3ed" id="RP_model_001_0001" name="001_0001" substanceUnits="mole" timeUnits="second" extentUnits="mole" fbc:strict="true">
4 <listOfCompartments>
5 <compartment metaid="_2e7d2c03a9507ae265ecf5b5356885a53393a2029d241394997265a1a25aefc6" sboTerm="SBO:0000290" id="c" name="cytosol" size="1" constant="true">
6 <annotation>
7 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
8 <rdf:Description rdf:about="#_2e7d2c03a9507ae265ecf5b5356885a53393a2029d241394997265a1a25aefc6">
9 <bqbiol:is>
10 <rdf:Bag>
11 <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c"/>
12 <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c_c"/>
13 <rdf:li rdf:resource="http://identifiers.org/metanetx.compartment/MNXC3"/>
14 <rdf:li rdf:resource="http://identifiers.org/seed/c"/>
15 <rdf:li rdf:resource="http://identifiers.org/seed/c0"/>
16 <rdf:li rdf:resource="http://identifiers.org/seed/cytosol"/>
17 <rdf:li rdf:resource="http://identifiers.org/name/cytosol"/>
18 </rdf:Bag>
19 </bqbiol:is>
20 </rdf:Description>
21 </rdf:RDF>
22 </annotation>
23 </compartment>
24 </listOfCompartments>
25 <listOfSpecies>
26 <species metaid="_2f4b2d21d00b43a266620e821de533b08c3e42ff09ca008f915ca4400eb7d8c4" id="MNXM8975" name="MNXM8975" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
27 <annotation>
28 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
29 <rdf:Description rdf:about="#_2f4b2d21d00b43a266620e821de533b08c3e42ff09ca008f915ca4400eb7d8c4">
30 <bqbiol:is>
31 <rdf:Bag/>
32 </bqbiol:is>
33 </rdf:Description>
34 <rdf:BRSynth rdf:about="#_2f4b2d21d00b43a266620e821de533b08c3e42ff09ca008f915ca4400eb7d8c4">
35 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
36 <brsynth:smiles/>
37 <brsynth:inchi/>
38 <brsynth:inchikey/>
39 <brsynth:fba_biomass_shadow_price>
40 <brsynth:value value="None"/>
41 </brsynth:fba_biomass_shadow_price>
42 <brsynth:fba_fraction_shadow_price>
43 <brsynth:value value="None"/>
44 </brsynth:fba_fraction_shadow_price>
45 <brsynth:thermo_standard_dg_formation>
46 <brsynth:value value="-2261.3806478863044"/>
47 <brsynth:units value="kilojoule / mole"/>
48 </brsynth:thermo_standard_dg_formation>
49 </brsynth:brsynth>
50 </rdf:BRSynth>
51 </rdf:RDF>
52 </annotation>
53 </species>
54 <species metaid="_61841f05183ff06dbe77a0e01f6d73d7a890997d823ac18d9fd56bac3d4bcc39" id="MNXM24" name="MNXM24" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
55 <annotation>
56 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
57 <rdf:Description rdf:about="#_61841f05183ff06dbe77a0e01f6d73d7a890997d823ac18d9fd56bac3d4bcc39">
58 <bqbiol:is>
59 <rdf:Bag/>
60 </bqbiol:is>
61 </rdf:Description>
62 <rdf:BRSynth rdf:about="#_61841f05183ff06dbe77a0e01f6d73d7a890997d823ac18d9fd56bac3d4bcc39">
63 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
64 <brsynth:smiles/>
65 <brsynth:inchi/>
66 <brsynth:inchikey/>
67 <brsynth:fba_biomass_shadow_price>
68 <brsynth:value value="None"/>
69 </brsynth:fba_biomass_shadow_price>
70 <brsynth:fba_fraction_shadow_price>
71 <brsynth:value value="None"/>
72 </brsynth:fba_fraction_shadow_price>
73 <brsynth:thermo_standard_dg_formation>
74 <brsynth:value value="-2256.1898491337233"/>
75 <brsynth:units value="kilojoule / mole"/>
76 </brsynth:thermo_standard_dg_formation>
77 </brsynth:brsynth>
78 </rdf:BRSynth>
79 </rdf:RDF>
80 </annotation>
81 </species>
82 <species metaid="_47d72a86d31940edf1cc42c7a7361a7a96211dc2a6679326b8ad27a7e216ada0" id="MNXM83" name="MNXM83" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
83 <annotation>
84 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
85 <rdf:Description rdf:about="#_47d72a86d31940edf1cc42c7a7361a7a96211dc2a6679326b8ad27a7e216ada0">
86 <bqbiol:is>
87 <rdf:Bag/>
88 </bqbiol:is>
89 </rdf:Description>
90 <rdf:BRSynth rdf:about="#_47d72a86d31940edf1cc42c7a7361a7a96211dc2a6679326b8ad27a7e216ada0">
91 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
92 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])([H])C(=C([H])[H])C([H])([H])[H]"/>
93 <brsynth:inchi value="InChI=1S/C5H12O7P2/c1-5(2)3-4-11-14(9,10)12-13(6,7)8/h1,3-4H2,2H3,(H,9,10)(H2,6,7,8)"/>
94 <brsynth:inchikey value="NUHSROFQTUXZQQ-UHFFFAOYSA-N"/>
95 <brsynth:fba_biomass_shadow_price>
96 <brsynth:value value="None"/>
97 </brsynth:fba_biomass_shadow_price>
98 <brsynth:fba_fraction_shadow_price>
99 <brsynth:value value="None"/>
100 </brsynth:fba_fraction_shadow_price>
101 <brsynth:thermo_standard_dg_formation>
102 <brsynth:value value="-1828.3274439664424"/>
103 <brsynth:units value="kilojoule / mole"/>
104 </brsynth:thermo_standard_dg_formation>
105 </brsynth:brsynth>
106 </rdf:BRSynth>
107 </rdf:RDF>
108 </annotation>
109 </species>
110 <species metaid="_6817bb5f7133f50744b232330f1f3009343f785b8f77602ce5f44cdd9458f002" id="TARGET_0000000001" name="TARGET_0000000001" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
111 <annotation>
112 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
113 <rdf:Description rdf:about="#_6817bb5f7133f50744b232330f1f3009343f785b8f77602ce5f44cdd9458f002">
114 <bqbiol:is>
115 <rdf:Bag/>
116 </bqbiol:is>
117 </rdf:Description>
118 <rdf:BRSynth rdf:about="#_6817bb5f7133f50744b232330f1f3009343f785b8f77602ce5f44cdd9458f002">
119 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
120 <brsynth:smiles value="[H]C(=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])=C(C([H])=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])([H])[H]"/>
121 <brsynth:inchi value="InChI=1S/C40H56/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,15-22,25-32H,13-14,23-24H2,1-10H3"/>
122 <brsynth:inchikey value="OAIJSZIZWZSQBC-UHFFFAOYSA-N"/>
123 <brsynth:fba_biomass_shadow_price>
124 <brsynth:value value="-0.0"/>
125 </brsynth:fba_biomass_shadow_price>
126 <brsynth:fba_fraction_shadow_price>
127 <brsynth:value value="-1.0"/>
128 </brsynth:fba_fraction_shadow_price>
129 <brsynth:thermo_standard_dg_formation>
130 <brsynth:value value="1245.5794452419402"/>
131 <brsynth:units value="kilojoule / mole"/>
132 </brsynth:thermo_standard_dg_formation>
133 </brsynth:brsynth>
134 </rdf:BRSynth>
135 </rdf:RDF>
136 </annotation>
137 </species>
138 <species metaid="a6e267be12defb7184259624f5adc519108c6c6adfe6be13f64b649567cb6df1" id="MNXM11" name="MNXM11" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
139 <annotation>
140 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
141 <rdf:Description rdf:about="#a6e267be12defb7184259624f5adc519108c6c6adfe6be13f64b649567cb6df1">
142 <bqbiol:is>
143 <rdf:Bag/>
144 </bqbiol:is>
145 </rdf:Description>
146 <rdf:BRSynth rdf:about="#a6e267be12defb7184259624f5adc519108c6c6adfe6be13f64b649567cb6df1">
147 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
148 <brsynth:smiles value="O=P(O)(O)OP(=O)(O)O"/>
149 <brsynth:inchi value="InChI=1S/H4O7P2/c1-8(2,3)7-9(4,5)6/h(H2,1,2,3)(H2,4,5,6)"/>
150 <brsynth:inchikey value="XPPKVPWEQAFLFU-UHFFFAOYSA-N"/>
151 <brsynth:fba_biomass_shadow_price>
152 <brsynth:value value="None"/>
153 </brsynth:fba_biomass_shadow_price>
154 <brsynth:fba_fraction_shadow_price>
155 <brsynth:value value="None"/>
156 </brsynth:fba_fraction_shadow_price>
157 <brsynth:thermo_standard_dg_formation>
158 <brsynth:value value="-1966.8036657706114"/>
159 <brsynth:units value="kilojoule / mole"/>
160 </brsynth:thermo_standard_dg_formation>
161 </brsynth:brsynth>
162 </rdf:BRSynth>
163 </rdf:RDF>
164 </annotation>
165 </species>
166 <species metaid="b0098569a07f786a6e9b2294639668cd4ee564dd642a38bdf429c4c6bb560b46" id="CMPD_0000000001" name="CMPD_0000000001" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
167 <annotation>
168 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
169 <rdf:Description rdf:about="#b0098569a07f786a6e9b2294639668cd4ee564dd642a38bdf429c4c6bb560b46">
170 <bqbiol:is>
171 <rdf:Bag/>
172 </bqbiol:is>
173 </rdf:Description>
174 <rdf:BRSynth rdf:about="#b0098569a07f786a6e9b2294639668cd4ee564dd642a38bdf429c4c6bb560b46">
175 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
176 <brsynth:smiles value="[H]C(=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]"/>
177 <brsynth:inchi value="InChI=1S/C40H64/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,19-22,27-30H,13-18,23-26,31-32H2,1-10H3"/>
178 <brsynth:inchikey value="YVLPJIGOMTXXLP-UHFFFAOYSA-N"/>
179 <brsynth:fba_biomass_shadow_price>
180 <brsynth:value value="-0.0"/>
181 </brsynth:fba_biomass_shadow_price>
182 <brsynth:fba_fraction_shadow_price>
183 <brsynth:value value="-1.0"/>
184 </brsynth:fba_fraction_shadow_price>
185 <brsynth:thermo_standard_dg_formation>
186 <brsynth:value value="936.7141451846444"/>
187 <brsynth:units value="kilojoule / mole"/>
188 </brsynth:thermo_standard_dg_formation>
189 </brsynth:brsynth>
190 </rdf:BRSynth>
191 </rdf:RDF>
192 </annotation>
193 </species>
194 <species metaid="_2c27bb432be6149f648dcec0e702fd9bdf6449fb9f730bd86eeb0b63b93d8858" id="CMPD_0000000003" name="CMPD_0000000003" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
195 <annotation>
196 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
197 <rdf:Description rdf:about="#_2c27bb432be6149f648dcec0e702fd9bdf6449fb9f730bd86eeb0b63b93d8858">
198 <bqbiol:is>
199 <rdf:Bag/>
200 </bqbiol:is>
201 </rdf:Description>
202 <rdf:BRSynth rdf:about="#_2c27bb432be6149f648dcec0e702fd9bdf6449fb9f730bd86eeb0b63b93d8858">
203 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
204 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]"/>
205 <brsynth:inchi value="InChI=1S/C20H36O7P2/c1-17(2)9-6-10-18(3)11-7-12-19(4)13-8-14-20(5)15-16-26-29(24,25)27-28(21,22)23/h9,11,13,15H,6-8,10,12,14,16H2,1-5H3,(H,24,25)(H2,21,22,23)"/>
206 <brsynth:inchikey value="OINNEUNVOZHBOX-UHFFFAOYSA-N"/>
207 <brsynth:fba_biomass_shadow_price>
208 <brsynth:value value="-0.0018808381539569818"/>
209 </brsynth:fba_biomass_shadow_price>
210 <brsynth:fba_fraction_shadow_price>
211 <brsynth:value value="-0.9919678714859438"/>
212 </brsynth:fba_fraction_shadow_price>
213 <brsynth:thermo_standard_dg_formation>
214 <brsynth:value value="-1495.8281099920857"/>
215 <brsynth:units value="kilojoule / mole"/>
216 </brsynth:thermo_standard_dg_formation>
217 </brsynth:brsynth>
218 </rdf:BRSynth>
219 </rdf:RDF>
220 </annotation>
221 </species>
222 <species metaid="_212c5940beac5625a2636d3d14fbc63cc5a8107d9dd39020ac544f296debabcc" id="MNXM132" name="MNXM132" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
223 <annotation>
224 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
225 <rdf:Description rdf:about="#_212c5940beac5625a2636d3d14fbc63cc5a8107d9dd39020ac544f296debabcc">
226 <bqbiol:is>
227 <rdf:Bag/>
228 </bqbiol:is>
229 </rdf:Description>
230 <rdf:BRSynth rdf:about="#_212c5940beac5625a2636d3d14fbc63cc5a8107d9dd39020ac544f296debabcc">
231 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
232 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]"/>
233 <brsynth:inchi value="InChI=1S/C5H12O7P2/c1-5(2)3-4-11-14(9,10)12-13(6,7)8/h3H,4H2,1-2H3,(H,9,10)(H2,6,7,8)"/>
234 <brsynth:inchikey value="CBIDRCWHNCKSTO-UHFFFAOYSA-N"/>
235 <brsynth:fba_biomass_shadow_price>
236 <brsynth:value value="None"/>
237 </brsynth:fba_biomass_shadow_price>
238 <brsynth:fba_fraction_shadow_price>
239 <brsynth:value value="None"/>
240 </brsynth:fba_fraction_shadow_price>
241 <brsynth:thermo_standard_dg_formation>
242 <brsynth:value value="-1833.2298341488033"/>
243 <brsynth:units value="kilojoule / mole"/>
244 </brsynth:thermo_standard_dg_formation>
245 </brsynth:brsynth>
246 </rdf:BRSynth>
247 </rdf:RDF>
248 </annotation>
249 </species>
250 </listOfSpecies>
251 <listOfParameters>
252 <parameter metaid="dc937b59892604f5a86ac96936cd7ff09e25f18ae6b758e8014a24c7fa039e91" sboTerm="SBO:0000625" id="BRS_FBC_10000_0" value="10000" constant="true"/>
253 <parameter metaid="dc937b59892604f5a86ac96936cd7ff09e25f18ae6b758e8014a24c7fa039e91" sboTerm="SBO:0000625" id="BRS_FBC_0_0" value="0" constant="true"/>
254 </listOfParameters>
255 <listOfReactions>
256 <reaction metaid="_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4" sboTerm="SBO:0000176" id="rxn_1" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0_0" fbc:upperFluxBound="BRS_FBC_10000_0">
257 <annotation>
258 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
259 <rdf:Description rdf:about="#_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4">
260 <bqbiol:is>
261 <rdf:Bag>
262 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.29"/>
263 </rdf:Bag>
264 </bqbiol:is>
265 </rdf:Description>
266 <rdf:BRSynth rdf:about="#_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4">
267 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
268 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H].[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])([H])C(=C([H])[H])C([H])([H])[H]&gt;&gt;[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H].O=P(O)(O)OP(=O)(O)O.O=P(O)(O)OP(=O)(O)O.O=P(O)(O)OP(=O)(O)O"/>
269 <brsynth:rp2_transfo_id value="TRS_0_2_739"/>
270 <brsynth:rule_ids>
271 <brsynth:RR-02-90bcfd187709eb1b-14-F/>
272 </brsynth:rule_ids>
273 <brsynth:tmpl_rxn_ids>
274 <brsynth:MNXR132232/>
275 </brsynth:tmpl_rxn_ids>
276 <brsynth:rule_score value="0.5706379442030705"/>
277 <brsynth:idx_in_path value="1"/>
278 <brsynth:selenzy/>
279 <brsynth:fba_biomass>
280 <brsynth:value value="0.0"/>
281 <brsynth:units value="gDW / gDW / hour"/>
282 </brsynth:fba_biomass>
283 <brsynth:fba_fraction>
284 <brsynth:value value="0.9388532834589001"/>
285 <brsynth:units value="milimole / gDW / hour"/>
286 </brsynth:fba_fraction>
287 <brsynth:thermo_dG0_prime>
288 <brsynth:value value="-3015.9215101389987"/>
289 <brsynth:error value="7.250256007547839"/>
290 <brsynth:units value="kilojoule / mole"/>
291 </brsynth:thermo_dG0_prime>
292 <brsynth:thermo_dGm_prime>
293 <brsynth:value value="-3050.151185208441"/>
294 <brsynth:error value="7.250256007547839"/>
295 <brsynth:units value="kilojoule / mole"/>
296 </brsynth:thermo_dGm_prime>
297 <brsynth:thermo_dG_prime>
298 <brsynth:value value="-3015.9215101389987"/>
299 <brsynth:error value="7.250256007547839"/>
300 <brsynth:units value="kilojoule / mole"/>
301 </brsynth:thermo_dG_prime>
302 <brsynth:thermo_dG>
303 <brsynth:value value="-3734.681829188674"/>
304 <brsynth:error value="7.250256007547839"/>
305 <brsynth:units value="kilojoule / mole"/>
306 </brsynth:thermo_dG>
307 </brsynth:brsynth>
308 </rdf:BRSynth>
309 </rdf:RDF>
310 </annotation>
311 <listOfReactants>
312 <speciesReference species="MNXM132" stoichiometry="1" constant="true"/>
313 <speciesReference species="MNXM83" stoichiometry="1" constant="true"/>
314 </listOfReactants>
315 <listOfProducts>
316 <speciesReference species="CMPD_0000000003" stoichiometry="1" constant="true"/>
317 <speciesReference species="MNXM11" stoichiometry="3" constant="true"/>
318 </listOfProducts>
319 </reaction>
320 <reaction metaid="c9c2d56fd0ad9d5b8cd80acad4b5df22945ab4de50db7b24db52a91a7560c3ff" sboTerm="SBO:0000176" id="rxn_2" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0_0" fbc:upperFluxBound="BRS_FBC_10000_0">
321 <annotation>
322 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
323 <rdf:Description rdf:about="#c9c2d56fd0ad9d5b8cd80acad4b5df22945ab4de50db7b24db52a91a7560c3ff">
324 <bqbiol:is>
325 <rdf:Bag>
326 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.96"/>
327 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.99"/>
328 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.32"/>
329 </rdf:Bag>
330 </bqbiol:is>
331 </rdf:Description>
332 <rdf:BRSynth rdf:about="#c9c2d56fd0ad9d5b8cd80acad4b5df22945ab4de50db7b24db52a91a7560c3ff">
333 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
334 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]&gt;&gt;[H]C(=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H].O=P(O)(O)OP(=O)(O)O.O=P(O)(O)OP(=O)(O)O"/>
335 <brsynth:rp2_transfo_id value="TRS_0_1_9"/>
336 <brsynth:rule_ids>
337 <brsynth:RR-02-bedda4e2f5001e0c-14-F/>
338 </brsynth:rule_ids>
339 <brsynth:tmpl_rxn_ids>
340 <brsynth:MNXR111250/>
341 <brsynth:MNXR111499/>
342 <brsynth:MNXR113543/>
343 <brsynth:MNXR118024/>
344 <brsynth:MNXR139549/>
345 </brsynth:tmpl_rxn_ids>
346 <brsynth:rule_score value="0.5518755963407151"/>
347 <brsynth:idx_in_path value="2"/>
348 <brsynth:selenzy/>
349 <brsynth:fba_biomass>
350 <brsynth:value value="0.0"/>
351 <brsynth:units value="gDW / gDW / hour"/>
352 </brsynth:fba_biomass>
353 <brsynth:fba_fraction>
354 <brsynth:value value="0.9388532834589001"/>
355 <brsynth:units value="milimole / gDW / hour"/>
356 </brsynth:fba_fraction>
357 <brsynth:thermo_dG0_prime>
358 <brsynth:value value="-119.13360567395966"/>
359 <brsynth:error value="11.000567449695138"/>
360 <brsynth:units value="kilojoule / mole"/>
361 </brsynth:thermo_dG0_prime>
362 <brsynth:thermo_dGm_prime>
363 <brsynth:value value="-153.36328074340173"/>
364 <brsynth:error value="11.000567449695138"/>
365 <brsynth:units value="kilojoule / mole"/>
366 </brsynth:thermo_dGm_prime>
367 <brsynth:thermo_dG_prime>
368 <brsynth:value value="-119.13360567395966"/>
369 <brsynth:error value="11.000567449695138"/>
370 <brsynth:units value="kilojoule / mole"/>
371 </brsynth:thermo_dG_prime>
372 <brsynth:thermo_dG>
373 <brsynth:value value="-1501.0650763644926"/>
374 <brsynth:error value="11.000567449695138"/>
375 <brsynth:units value="kilojoule / mole"/>
376 </brsynth:thermo_dG>
377 </brsynth:brsynth>
378 </rdf:BRSynth>
379 </rdf:RDF>
380 </annotation>
381 <listOfReactants>
382 <speciesReference species="CMPD_0000000003" stoichiometry="1" constant="true"/>
383 </listOfReactants>
384 <listOfProducts>
385 <speciesReference species="CMPD_0000000001" stoichiometry="1" constant="true"/>
386 <speciesReference species="MNXM11" stoichiometry="2" constant="true"/>
387 </listOfProducts>
388 </reaction>
389 <reaction metaid="_376841fa42ba139764a5509b9d817e2e540d0e228582c970025c73ae1ee77c0d" sboTerm="SBO:0000176" id="rxn_3" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0_0" fbc:upperFluxBound="BRS_FBC_10000_0">
390 <annotation>
391 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
392 <rdf:Description rdf:about="#_376841fa42ba139764a5509b9d817e2e540d0e228582c970025c73ae1ee77c0d">
393 <bqbiol:is>
394 <rdf:Bag>
395 <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.99.31"/>
396 </rdf:Bag>
397 </bqbiol:is>
398 </rdf:Description>
399 <rdf:BRSynth rdf:about="#_376841fa42ba139764a5509b9d817e2e540d0e228582c970025c73ae1ee77c0d">
400 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
401 <brsynth:smiles value="[H]C(=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]&gt;&gt;[H]C(=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])=C(C([H])=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])([H])[H]"/>
402 <brsynth:rp2_transfo_id value="TRS_0_0_1"/>
403 <brsynth:rule_ids>
404 <brsynth:RR-02-ae41ec5771136ea5-14-F/>
405 </brsynth:rule_ids>
406 <brsynth:tmpl_rxn_ids>
407 <brsynth:MNXR113128/>
408 </brsynth:tmpl_rxn_ids>
409 <brsynth:rule_score value="0.7358363677022237"/>
410 <brsynth:idx_in_path value="3"/>
411 <brsynth:selenzy/>
412 <brsynth:fba_biomass>
413 <brsynth:value value="0.0"/>
414 <brsynth:units value="gDW / gDW / hour"/>
415 </brsynth:fba_biomass>
416 <brsynth:fba_fraction>
417 <brsynth:value value="0.9388532834589001"/>
418 <brsynth:units value="milimole / gDW / hour"/>
419 </brsynth:fba_fraction>
420 <brsynth:thermo_dG0_prime>
421 <brsynth:value value="1191.8613577748536"/>
422 <brsynth:error value="44.93683979991009"/>
423 <brsynth:units value="kilojoule / mole"/>
424 </brsynth:thermo_dG0_prime>
425 <brsynth:thermo_dGm_prime>
426 <brsynth:value value="1191.8613577748536"/>
427 <brsynth:error value="44.93683979991009"/>
428 <brsynth:units value="kilojoule / mole"/>
429 </brsynth:thermo_dGm_prime>
430 <brsynth:thermo_dG_prime>
431 <brsynth:value value="1191.8613577748536"/>
432 <brsynth:error value="44.93683979991009"/>
433 <brsynth:units value="kilojoule / mole"/>
434 </brsynth:thermo_dG_prime>
435 <brsynth:thermo_dG>
436 <brsynth:value value="329.6284950676197"/>
437 <brsynth:error value="44.93683979991009"/>
438 <brsynth:units value="kilojoule / mole"/>
439 </brsynth:thermo_dG>
440 </brsynth:brsynth>
441 </rdf:BRSynth>
442 </rdf:RDF>
443 </annotation>
444 <listOfReactants>
445 <speciesReference species="CMPD_0000000001" stoichiometry="1" constant="true"/>
446 <speciesReference species="MNXM8975" stoichiometry="4" constant="true"/>
447 </listOfReactants>
448 <listOfProducts>
449 <speciesReference species="MNXM24" stoichiometry="4" constant="true"/>
450 <speciesReference species="TARGET_0000000001" stoichiometry="1" constant="true"/>
451 </listOfProducts>
452 </reaction>
453 </listOfReactions>
454 <groups:listOfGroups>
455 <groups:group metaid="_93eef40c447d295fa61df9270c5fd909ec2ba7ee9883090552c0466873cd4299" groups:id="rp_pathway" groups:kind="collection">
456 <annotation>
457 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
458 <rdf:BRSynth rdf:about="#_93eef40c447d295fa61df9270c5fd909ec2ba7ee9883090552c0466873cd4299">
459 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
460 <brsynth:fba_biomass>
461 <brsynth:value value="0.87699721442697"/>
462 <brsynth:units value="gDW / gDW / hour"/>
463 </brsynth:fba_biomass>
464 <brsynth:fba_fraction>
465 <brsynth:value value="0.9388532834589001"/>
466 <brsynth:units value="milimole / gDW / hour"/>
467 </brsynth:fba_fraction>
468 <brsynth:thermo_dG0_prime>
469 <brsynth:value value="-1943.1937580381036"/>
470 <brsynth:error value="48.85909247104981"/>
471 <brsynth:units value="kilojoule / mole"/>
472 </brsynth:thermo_dG0_prime>
473 <brsynth:thermo_dGm_prime>
474 <brsynth:value value="-2011.6531081769876"/>
475 <brsynth:error value="48.85909247104981"/>
476 <brsynth:units value="kilojoule / mole"/>
477 </brsynth:thermo_dGm_prime>
478 <brsynth:thermo_dG_prime>
479 <brsynth:value value="-1943.1937580381036"/>
480 <brsynth:error value="48.85909247104981"/>
481 <brsynth:units value="kilojoule / mole"/>
482 </brsynth:thermo_dG_prime>
483 <brsynth:thermo_dG>
484 <brsynth:value value="-4906.1184104855465"/>
485 <brsynth:error value="48.85909247104981"/>
486 <brsynth:units value="kilojoule / mole"/>
487 </brsynth:thermo_dG>
488 <brsynth:global_score value="0.9850856959819794"/>
489 </brsynth:brsynth>
490 </rdf:BRSynth>
491 </rdf:RDF>
492 </annotation>
493 <groups:listOfMembers>
494 <groups:member groups:idRef="rxn_1"/>
495 <groups:member groups:idRef="rxn_2"/>
496 <groups:member groups:idRef="rxn_3"/>
497 </groups:listOfMembers>
498 </groups:group>
499 <groups:group metaid="_613b064337553014ede418c67180137a4561ff11b13f3bfa1a2765ef37ac375a" groups:id="rp_intermediate_species" groups:kind="collection">
500 <annotation>
501 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
502 <rdf:BRSynth rdf:about="#_613b064337553014ede418c67180137a4561ff11b13f3bfa1a2765ef37ac375a">
503 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
504 </rdf:BRSynth>
505 </rdf:RDF>
506 </annotation>
507 <groups:listOfMembers>
508 <groups:member groups:idRef="CMPD_0000000001"/>
509 <groups:member groups:idRef="CMPD_0000000003"/>
510 </groups:listOfMembers>
511 </groups:group>
512 <groups:group metaid="_564fce39b23c6cf87d12dc2c612448384fd2cd980fe3fc07829e2ef802645579" groups:id="rp_trunk_species" groups:kind="collection">
513 <annotation>
514 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
515 <rdf:BRSynth rdf:about="#_564fce39b23c6cf87d12dc2c612448384fd2cd980fe3fc07829e2ef802645579">
516 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
517 </rdf:BRSynth>
518 </rdf:RDF>
519 </annotation>
520 <groups:listOfMembers>
521 <groups:member groups:idRef="MNXM83"/>
522 <groups:member groups:idRef="TARGET_0000000001"/>
523 <groups:member groups:idRef="CMPD_0000000001"/>
524 <groups:member groups:idRef="CMPD_0000000003"/>
525 <groups:member groups:idRef="MNXM132"/>
526 </groups:listOfMembers>
527 </groups:group>
528 <groups:group metaid="_9e3154173c97366b3980dd1642e1e35d0bdfc3274abc744e89ecb518bcd48378" groups:id="rp_completed_species" groups:kind="collection">
529 <annotation>
530 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
531 <rdf:BRSynth rdf:about="#_9e3154173c97366b3980dd1642e1e35d0bdfc3274abc744e89ecb518bcd48378">
532 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
533 </rdf:BRSynth>
534 </rdf:RDF>
535 </annotation>
536 <groups:listOfMembers>
537 <groups:member groups:idRef="MNXM8975"/>
538 <groups:member groups:idRef="MNXM11"/>
539 <groups:member groups:idRef="MNXM24"/>
540 </groups:listOfMembers>
541 </groups:group>
542 <groups:group metaid="_58b3b59284e0d918d6d3f3bcadc2d757726da7594cd899cad4e745836ac967a3" groups:id="rp_sink_species" groups:kind="collection">
543 <annotation>
544 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
545 <rdf:BRSynth rdf:about="#_58b3b59284e0d918d6d3f3bcadc2d757726da7594cd899cad4e745836ac967a3">
546 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
547 </rdf:BRSynth>
548 </rdf:RDF>
549 </annotation>
550 <groups:listOfMembers>
551 <groups:member groups:idRef="MNXM83"/>
552 <groups:member groups:idRef="MNXM11"/>
553 <groups:member groups:idRef="MNXM132"/>
554 </groups:listOfMembers>
555 </groups:group>
556 <groups:group metaid="a0f48a6fe4f833a3d15abd7ee5b944b97d629570ac09588e9fb6fdf6196ab189" groups:id="rp_fba_ignored_species" groups:kind="collection">
557 <annotation>
558 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
559 <rdf:BRSynth rdf:about="#a0f48a6fe4f833a3d15abd7ee5b944b97d629570ac09588e9fb6fdf6196ab189">
560 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
561 </rdf:BRSynth>
562 </rdf:RDF>
563 </annotation>
564 <groups:listOfMembers>
565 <groups:member groups:idRef="MNXM8975"/>
566 <groups:member groups:idRef="MNXM24"/>
567 </groups:listOfMembers>
568 </groups:group>
569 <groups:group metaid="fb9b29ba20af773fed953f1d6726905a453f235c9a4baa7217f02760bc2057f8" groups:id="rp_thermo_substituted_species" groups:kind="collection">
570 <annotation>
571 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
572 <rdf:BRSynth rdf:about="#fb9b29ba20af773fed953f1d6726905a453f235c9a4baa7217f02760bc2057f8">
573 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
574 </rdf:BRSynth>
575 </rdf:RDF>
576 </annotation>
577 <groups:listOfMembers>
578 <groups:member groups:idRef="MNXM8975"/>
579 <groups:member groups:idRef="TARGET_0000000001"/>
580 <groups:member groups:idRef="MNXM24"/>
581 </groups:listOfMembers>
582 </groups:group>
583 </groups:listOfGroups>
584 </model>
585 </sbml>