Mercurial > repos > tduigou > rpranker
comparison rpranker.xml @ 2:ebbdb240c507 draft
planemo upload commit f40274f6b9f6a15eb4022aab21286d4c96cd8475-dirty
author | tduigou |
---|---|
date | Fri, 21 Oct 2022 14:57:59 +0000 |
parents | bab690866445 |
children | 422a5c9f3583 |
comparison
equal
deleted
inserted
replaced
1:bab690866445 | 2:ebbdb240c507 |
---|---|
1 <tool id="rpranker" name="Rank Pathways" version="@TOOL_VERSION@"> | 1 <tool id="rpranker" name="Rank Pathways" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.09"> |
2 <description>Rank heterologous pathways according to their global score</description> | 2 <description>Rank heterologous pathways according to their global score</description> |
3 <macros> | 3 <macros> |
4 <token name="@TOOL_VERSION@">5.12.1</token> | 4 <token name="@VERSION_SUFFIX@">0</token> |
5 <token name="@TOOL_VERSION@">5.13.1</token> | |
5 </macros> | 6 </macros> |
6 <requirements> | 7 <requirements> |
7 <requirement type="package" version="@TOOL_VERSION@">rptools</requirement> | 8 <requirement type="package" version="@TOOL_VERSION@">rptools</requirement> |
8 </requirements> | 9 </requirements> |
9 <stdio> | 10 <stdio> |
17 '$input' | 18 '$input' |
18 #end for | 19 #end for |
19 > '$sorted_pathways' | 20 > '$sorted_pathways' |
20 ]]></command> | 21 ]]></command> |
21 <inputs> | 22 <inputs> |
22 <param name="pathway_collection" type="data_collection" format="xml" collection_type="list" label="Pathways" /> | 23 <param name="pathway_collection" type="data_collection" format="sbml" collection_type="list" label="Pathways" /> |
23 </inputs> | 24 </inputs> |
24 <outputs> | 25 <outputs> |
25 <data name="sorted_pathways" format="csv" label="Ranked Pathways" /> | 26 <data name="sorted_pathways" format="csv" label="Ranked Pathways" /> |
26 </outputs> | 27 </outputs> |
27 <tests> | 28 <tests> |
52 Input | 53 Input |
53 ----- | 54 ----- |
54 | 55 |
55 Required: | 56 Required: |
56 | 57 |
57 * **pathways**\ : (list of string) Paths to pathway (rpSBML) files | 58 * **Pathways**\ : List of pathway files (rpSBML) |
58 | 59 |
59 Output | 60 Output |
60 ------ | 61 ------ |
61 | 62 |
62 * **output**\ : (string) Sorted names and scores of pathways | 63 * **Ranked Pathways**\ : Sorted names and scores of pathways |
63 | 64 |
64 Project Links | 65 Project Links |
65 ------------------ | 66 ------------------ |
66 | 67 |
67 * `GitHub <https://github.com/brsynth/rptools/tree/master/rptools/rprank>`_ | 68 * `GitHub <https://github.com/brsynth/rptools/tree/master/rptools/rprank>`_ |
68 | 69 |
69 Version | |
70 ---------- | |
71 | |
72 5.12.1 | |
73 | |
74 License | 70 License |
75 ------- | 71 ------- |
76 | 72 |
77 * `MIT <https://github.com/brsynth/rptools/blob/master/LICENSE>`_ | 73 * `MIT <https://github.com/brsynth/rptools/blob/master/LICENSE>`_ |
78 | |
79 Authors | |
80 ------- | |
81 | |
82 * **Joan Hérisson** | |
83 | 74 |
84 Acknowledgments | 75 Acknowledgments |
85 --------------- | 76 --------------- |
86 | 77 |
87 * Thomas Duigou | 78 * Thomas Duigou |
88 | 79 |
89 ]]></help> | 80 ]]></help> |
81 <creator> | |
82 <person givenName="Joan" familyName="Hérisson" email="joan.herisson@univ-evry.fr" identifier="https://orcid.org/0000-0001-9741-0847" /> | |
83 </creator> | |
90 </tool> | 84 </tool> |