Mercurial > repos > tduigou > rpranker

changeset 1:bab690866445 draft

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"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
author tduigou
date Tue, 15 Feb 2022 13:26:44 +0000
parents e95370d2e5f9
children ebbdb240c507
files rpranker.xml
diffstat 1 files changed, 10 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/rpranker.xml	Mon Dec 13 18:19:24 2021 +0000
+++ b/rpranker.xml	Tue Feb 15 13:26:44 2022 +0000
@@ -1,12 +1,15 @@
-<tool id="rpranker" name="Rank Pathways" version="5.10.0">
+<tool id="rpranker" name="Rank Pathways" version="@TOOL_VERSION@">
     <description>Rank heterologous pathways according to their global score</description>
+    <macros>
+        <token name="@TOOL_VERSION@">5.12.1</token>
+    </macros>
     <requirements>
-        <requirement type="package" version="5.10.0">rptools</requirement>
+        <requirement type="package" version="@TOOL_VERSION@">rptools</requirement>
     </requirements>
     <stdio>
-	    <regex match="WARNING" level="warning" />
-		<regex match="ERROR" level="fatal" />
-	</stdio>
+        <regex match="WARNING" level="warning" />
+        <regex match="ERROR" level="fatal" />
+    </stdio>
     <command detect_errors="exit_code"><![CDATA[
         python -m rptools.rprank
         --pathways
@@ -16,7 +19,7 @@
         > '$sorted_pathways'
     ]]></command>
     <inputs>
-        <param name="pathway_collection" type="data_collection" collection_type="list" label="Pathways" />
+        <param name="pathway_collection" type="data_collection" format="xml" collection_type="list" label="Pathways" />
     </inputs>
     <outputs>
         <data name="sorted_pathways" format="csv" label="Ranked Pathways" />
@@ -66,7 +69,7 @@
 Version
 ----------
 
-5.10.0
+5.12.1
 
 License
 -------