Mercurial > repos > tduigou > selenzy

annotate selenzy_wrapper.xml @ 3:be121e7d0c9d draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 45a7c182f39c67507b05e39509b865a04ecdd1f9
author tduigou
date Tue, 23 May 2023 14:17:15 +0000
parents 164ccfcd18ec
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
2
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
1 <tool id="selenzy-wrapper" name="Selenzyme" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.09">
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
2 <description>Performs enzyme selection from a reaction query</description>
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
3 <macros>
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
4 <token name="@VERSION_SUFFIX@">0</token>
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
5 <token name="@TOOL_VERSION@">0.3.0</token>
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
6 </macros>
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
7 <requirements>
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
8 <requirement type="package" version="@TOOL_VERSION@">selenzy_wrapper</requirement>
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
9 </requirements>
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
10 <command detect_errors="exit_code"><![CDATA[
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
11 python -m selenzy_wrapper '$pathway' '$uniprot_ids'
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
12 --nb_targets '$adv.nb_targets'
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
13 --d '$adv.direction'
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
14 $adv.NoMSA
3
be121e7d0c9d planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 45a7c182f39c67507b05e39509b865a04ecdd1f9
tduigou
parents: 2
diff changeset
15 #if str($host_taxID_type_conditional.host_taxID_type) == "tsv":
be121e7d0c9d planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 45a7c182f39c67507b05e39509b865a04ecdd1f9
tduigou
parents: 2
diff changeset
16 --host_taxID `sed 1d ${host_taxID_type_conditional.host_taxID_file}`
be121e7d0c9d planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 45a7c182f39c67507b05e39509b865a04ecdd1f9
tduigou
parents: 2
diff changeset
17 #else:
be121e7d0c9d planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 45a7c182f39c67507b05e39509b865a04ecdd1f9
tduigou
parents: 2
diff changeset
18 --host_taxID '$host_taxID_type_conditional.host_taxID_int'
be121e7d0c9d planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 45a7c182f39c67507b05e39509b865a04ecdd1f9
tduigou
parents: 2
diff changeset
19 #end if
2
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
20 #if str($adv.enzyme_taxIDs) != "":
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
21 --enzyme_taxIDs '$adv.enzyme_taxIDs'
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
22 #end if
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
23 --nb_ids '$adv.nb_ids'
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
24 --to_csv '$uniprot_ids_csv'
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
25 --data-path "\${TMPDIR:-.}"
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
26 ]]></command>
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
27 <inputs>
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
28 <param name="pathway" type="data" format="sbml" label="Pathway (SBML)" />
3
be121e7d0c9d planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 45a7c182f39c67507b05e39509b865a04ecdd1f9
tduigou
parents: 2
diff changeset
29 <conditional name="host_taxID_type_conditional">
be121e7d0c9d planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 45a7c182f39c67507b05e39509b865a04ecdd1f9
tduigou
parents: 2
diff changeset
30 <param name="host_taxID_type" type="select" label="Host taxon ID type">
be121e7d0c9d planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 45a7c182f39c67507b05e39509b865a04ecdd1f9
tduigou
parents: 2
diff changeset
31 <option value="integer" selected="True">Value</option>
be121e7d0c9d planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 45a7c182f39c67507b05e39509b865a04ecdd1f9
tduigou
parents: 2
diff changeset
32 <option value="tsv">File</option>
be121e7d0c9d planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 45a7c182f39c67507b05e39509b865a04ecdd1f9
tduigou
parents: 2
diff changeset
33 </param>
be121e7d0c9d planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 45a7c182f39c67507b05e39509b865a04ecdd1f9
tduigou
parents: 2
diff changeset
34 <when value="integer">
be121e7d0c9d planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 45a7c182f39c67507b05e39509b865a04ecdd1f9
tduigou
parents: 2
diff changeset
35 <param name="host_taxID_int" type="integer" label="Host taxon ID value" value="83333" help="default: 83333 [E. coli K12]" />
be121e7d0c9d planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 45a7c182f39c67507b05e39509b865a04ecdd1f9
tduigou
parents: 2
diff changeset
36 </when>
be121e7d0c9d planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 45a7c182f39c67507b05e39509b865a04ecdd1f9
tduigou
parents: 2
diff changeset
37 <when value="tsv">
be121e7d0c9d planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 45a7c182f39c67507b05e39509b865a04ecdd1f9
tduigou
parents: 2
diff changeset
38 <param name="host_taxID_file" type="data" format="tsv" label="Host taxon ID file" />
be121e7d0c9d planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 45a7c182f39c67507b05e39509b865a04ecdd1f9
tduigou
parents: 2
diff changeset
39 </when>
be121e7d0c9d planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 45a7c182f39c67507b05e39509b865a04ecdd1f9
tduigou
parents: 2
diff changeset
40 </conditional>
2
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
41 <section name="adv" title="Advanced Options" expanded="false">
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
42 <param name="enzyme_taxIDs" type="text" value="" label="Comma separated taxon IDs of output enzyme sequences" />
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
43 <param name="nb_ids" type="integer" value="-1" label="Number of uniprot IDs with top score to keep" help=" Number of enzyme IDs to display in results (after taxon IDs filtering) [default = -1 (no limit)]" />
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
44 <param name="nb_targets" type="integer" value="500" min="1" label="Number of targets to display in results" help="Number of targets to display in results (before taxon IDs filtering) [default = 500]" />
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
45 <param name="direction" type="float" value="0" label="Use similarity values for preferred reaction direction only" help="You can choose to rank similarities in both reaction directions or to use only the direction of the reaction based on a consensus list that has been generated according to reaction information based on curated information from MetaCyc (Metabolic Pathway Database) [default=0 (OFF)]" />
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
46 <param argument="--NoMSA" type="boolean" falsevalue="--NoMSA" truevalue="" checked="true" display="checkboxes" label="Do not compute MSA/conservation scores ?" help="Do not compute Multiple Sequence Alignment and conservation scores ? (MSA scores are computed by default)" />
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
47 </section>
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
48 </inputs>
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
49 <outputs>
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
50 <data name="uniprot_ids" format="sbml" label="Uniprot IDs (SBML)" />
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
51 <data name="uniprot_ids_csv" format="csv" label="Uniprot IDs (CSV)" />
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
52 </outputs>
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
53 <tests>
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
54 <test>
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
55 <!-- test 1: check if identical outputs are produced with default parameters -->
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
56 <param name="pathway" value="pathway.xml" />
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
57 <output name="uniprot_ids" file="uniprod_ids_out.xml" compare="diff" sort="true"/>
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
58 <output name="uniprot_ids_csv" file="uniprod_ids_out.csv" ftype="csv" compare="diff"/>
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
59 </test>
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
60 </tests>
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
61 <help><![CDATA[
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
62 Selenzyme
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
63 ================
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
64
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
65 Selenzyme searches for enzymes corresponding to each reaction of the pathway. It performs a reaction similarity search in the reference reaction database `MetaNetX <https://www.metanetx.org/>`_ and outputs an updated SBML file annotated with the enzyme UniProt IDs, as well as in CSV format.
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
66
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
67 Input
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
68 -----
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
69
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
70 * **Pathway (SBML)**\ : SBML pathway file
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
71 * **Number of targets to display in results**\ : (integer) Number of targets to display in results (before taxon IDs filtering) [default = 500]
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
72 * **Number of uniprot IDs with top score to keep**\ : (integer) Number of enzyme IDs to display in results (after taxon IDs filtering) [default = -1 (no limit)]
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
73 * **Use similarity values for preferred reaction direction only**\ : (float) Use similarity values for preferred reaction direction only [default=0 (OFF)]
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
74 * **Do not compute MSA/conservation scores ?**\ : (boolean) Do not compute Multiple Sequence Alignment and conservation scores ? (MSA scores are computed by default)
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
75 * **Host taxon ID**\ : (string) Taxon ID of the chassis (default: 83333 [E. coli K12])
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
76 * **Comma separated taxon IDs of output enzyme sequences**\ : (string) Comma separated taxon IDs of output enzyme sequences
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
77
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
78 Output
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
79 ------
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
80
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
81 * **Uniprot IDs (SBML)**\ : Annotated SBML pathway.
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
82 * **Uniprot IDs (CSV)**\ : Annotated CSV pathway.
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
83
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
84 Project Links
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
85 ------------------
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
86
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
87 * `GitHub <https://github.com/brsynth/selenzy-wrapper>`_
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
88
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
89 Version
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
90 ----------
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
91
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
92 0.3.0
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
93
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
94 Authors
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
95 -------
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
96 * **Joan Hérisson**
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
97
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
98 License
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
99 -------
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
100
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
101 * `MIT <https://github.com/brsynth/selenzy-wrapper/blob/master/LICENSE>`_
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
102
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
103 Acknowledgments
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
104 ---------------
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
105
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
106 * Thomas Duigou
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
107
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
108 ]]></help>
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
109 <citations>
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
110 <citation type="doi">10.1093/bioinformatics/bty065</citation>
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
111 </citations>
164ccfcd18ec planemo upload for repository https://github.com/brsynth/selenzy-wrapper commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
tduigou
parents:
diff changeset
112 </tool>