Mercurial > repos > tduigou > seq_to_db
diff test-data/HC_Amp_ccdB.gb @ 0:9f845ccb1a9f draft
planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
| author | tduigou |
|---|---|
| date | Wed, 11 Jun 2025 13:36:44 +0000 |
| parents | |
| children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/HC_Amp_ccdB.gb Wed Jun 11 13:36:44 2025 +0000 @@ -0,0 +1,109 @@ +LOCUS Exported 2721 bp ds-DNA circular SYN 14-SEP-2017 +DEFINITION synthetic circular DNA. +ACCESSION . +VERSION . +KEYWORDS HC_Amp_ccdB(1-25).gb +SOURCE synthetic DNA construct + ORGANISM synthetic DNA construct +REFERENCE 1 (bases 1 to 2721) + AUTHORS Trial User + TITLE Direct Submission + JOURNAL Exported Sep 14, 2017 from SnapGene Viewer 4.0.2 + http://www.snapgene.com +FEATURES Location/Qualifiers + source 1..2721 + /organism="synthetic DNA construct" + /mol_type="other DNA" + misc_feature complement(73..78) + /label=BsmBI + misc_feature 129..462 + /label=*ccdB promoter* + exon 463..768 + /label=ccdB + /note="ccdB" + terminator 809..880 + /note="rrnB T1 terminator + transcription terminator T1 from the E. coli rrnB gene" + terminator 896..923 + /note="T7Te terminator + phage T7 early transcription terminator" + misc_feature 930..942 + /label=BioBrick suffix + /note="universal suffix for all parts" + misc_feature 943..948 + /label=BsmBI + terminator 1027..1056 + /note="T3Te terminator + phage T3 early transcription terminator" + rep_origin 1078..1665 + /direction=RIGHT + /label=ori + /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of + replication" + terminator 1677..1704 + /note="T7Te terminator + phage T7 early transcription terminator" + CDS complement(1728..2588) + /codon_start=1 + /gene="bla" + /product="beta-lactamase" + /note="AmpR + confers resistance to ampicillin, carbenicillin, and + related antibiotics" + /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI + ELDLNSGKILESLRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS + PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLATIGGPKELTAFLHNMGDHVTRLDRW + EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGSLLRSA + LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS + LIKHW" + promoter complement(2589..2691) + /note="cat promoter + promoter of the E. coli cat gene" +ORIGIN + 1 ctttctgcta tggaggtcag gtatgattta aatggtcagt attgagcgat atctagagaa + 61 ttcgtcatag gagagacgca atacgcaaac cgcctctccc cgcgcgttgg ccgattcatt + 121 aatgcaggga tccggcttac taaaagccag ataacagtat gcgtatttgc gcgctgattt + 181 ttgcggtata agaatatata ctgatatgta tacccgaagt atgtcaaaaa gaggtatgct + 241 atgaagcagc gtattacagt gacagttgac agcgacagct atcagttgct caaggcatat + 301 atgatgtcaa tatctccggt ctggtaagca caaccatgca gaatgaagcc cgtcgtctgc + 361 gtgccgaacg ctggaaagcg gaaaatcagg aagggatggc tgaggtcgcc cggtttattg + 421 aaatgaacgg ctcttttgct gacgagaaca ggggctggtg aaatgcagtt taaggtttac + 481 acctataaaa gagagagccg ttatcgtctg tttgtggatg tacagagtga tattattgac + 541 acgcccgggc gacggatggt gatccccctg gccagtgcac gtctgctgtc agataaagtc + 601 ccccgtgaac tttacccggt ggtgcatatc ggggatgaaa gctggcgcat gatgaccacc + 661 gatatggcca gtgtgccggt ctccgttatc ggggaagaag tggctgatct cagccaccgc + 721 gaaaatgaca tcaaaaacgc cattaacctg atgttctggg gaatataagc tgatagtgct + 781 agtgtagatc gctactagag ccaggcatca aataaaacga aaggctcagt cgaaagactg + 841 ggcctttcgt tttatctgtt gtttgtcggt gaacgctctc tactagagtc acactggctc + 901 accttcgggt gggcctttct gcgtttatat actagtagcg gccgtctcaa cgataacgaa + 961 ttcaagcttg atatcattca ggacgagcct cagactccag cgtaactgga ctgcaatcaa + 1021 ctcactggct caccttcacg ggtgggcctt tcttcggtag aaaatcaaag gatcttcttg + 1081 agatcctttt tttctgcgcg taatctgctg cttgcaaaca aaaaaaccac cgctaccagc + 1141 ggtggtttgt ttgccggatc aagagctacc aactcttttt ccgaggtaac tggcttcagc + 1201 agagcgcaga taccaaatac tgttcttcta gtgtagccgt agttaggcca ccacttcaag + 1261 aactctgtag caccgcctac atacctcgct ctgctaatcc tgttaccagt ggctgctgcc + 1321 agtggcgata agtcgtgtct taccgggttg gactcaagac gatagttacc ggataaggcg + 1381 cagcggtcgg gctgaacggg gggttcgtgc acacagccca gcttggagcg aacgacctac + 1441 accgaactga gatacctaca gcgtgagcta tgagaaagcg ccacgcttcc cgaagggaga + 1501 aaggcggaca ggtatccggt aagcggcagg gtcggaacag gagagcgcac gagggagctt + 1561 ccagggggaa acgcctggta tctttatagt cctgtcgggt ttcgccacct ctgacttgag + 1621 catcgatttt tgtgatgctc gtcagggggg cggagcctat ggaaaaacgc cagcaacgca + 1681 gaaaggccca cccgaaggtg agccaggtga ttacatttgg gccctcatta ccaatgctta + 1741 atcagtgagg cacctatctc agcgatctgt ctatttcgtt catccatagt tgcctgactc + 1801 cccgtcgtgt agataactac gatgcgggag ggcttaccat ctggccccag tgctgcaatg + 1861 ataccgcgag aaccacgctc accggctcca gatttatcag caataaacca gccagccggg + 1921 agggccgagc gcagaagtga tcctgcaact ttatccgcct ccatccagtc tattaattgt + 1981 tgccgggaag ctagagtaag tagttcgcca gttaatagtt tgcgcaacgt tgttgccatt + 2041 gctacaggca tcgtggtgtc acgctcgtcg tttggtatgg cttcattcag ctccggttcc + 2101 caacgatcaa ggcgagttac atgatccccc atgttgtgca aaaaagcggt tagctccttc + 2161 ggtcctccga tcgttgccag aagtaagttg gccgcagtgt tatcactcat ggttatggca + 2221 gcactgcata attctcttac tgtcatgcca tccgtgagat gcttttctgt gactggtgag + 2281 tactcaacca agtcattctg agaatagtgt atgcggcgac cgagttgctc ttgcccggcg + 2341 tcaatacggg ataataccgc gccacatagc agaactttaa aagtgctcat cattggaaaa + 2401 cgttcttcgg ggcgtaaact ctcaaggatc ttaccgctgt tgagatccag ttcgatgtaa + 2461 cccactcgtg cacccaactg atcttcagca tcttttactt tcaccagcgt ttctgggtga + 2521 gcaaaaacag gaaggcaaaa tgccgcaaaa aagggaataa gggcgacacg gaaatgttga + 2581 atactcattt tagcttcctt agctcctgaa aatctcgata actcaaaaaa tacgcccggt + 2641 agtgatctta tttcattatg gtgaaagttg gaacctctta cgtgccgatc aagtcaaaag + 2701 cctccggtcg gaggcttttg a +//
