view test-data/HC_Amp_ccdB.gb @ 2:dad2c4c3450a draft default tip

planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools commit db4ac861e1d03fcdfe94321d858839124e493930-dirty
author tduigou
date Wed, 23 Jul 2025 09:44:33 +0000
parents 9f845ccb1a9f
children
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LOCUS       Exported                2721 bp ds-DNA     circular SYN 14-SEP-2017
DEFINITION  synthetic circular DNA.
ACCESSION   .
VERSION     .
KEYWORDS    HC_Amp_ccdB(1-25).gb
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 2721)
  AUTHORS   Trial User
  TITLE     Direct Submission
  JOURNAL   Exported Sep 14, 2017 from SnapGene Viewer 4.0.2
            http://www.snapgene.com
FEATURES             Location/Qualifiers
     source          1..2721
                     /organism="synthetic DNA construct"
                     /mol_type="other DNA"
     misc_feature    complement(73..78)
                     /label=BsmBI
     misc_feature    129..462
                     /label=*ccdB promoter*
     exon            463..768
                     /label=ccdB
                     /note="ccdB"
     terminator      809..880
                     /note="rrnB T1 terminator
                     transcription terminator T1 from the E. coli rrnB gene"
     terminator      896..923
                     /note="T7Te terminator
                     phage T7 early transcription terminator"
     misc_feature    930..942
                     /label=BioBrick suffix
                     /note="universal suffix for all parts"
     misc_feature    943..948
                     /label=BsmBI
     terminator      1027..1056
                     /note="T3Te terminator
                     phage T3 early transcription terminator"
     rep_origin      1078..1665
                     /direction=RIGHT
                     /label=ori
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"
     terminator      1677..1704
                     /note="T7Te terminator
                     phage T7 early transcription terminator"
     CDS             complement(1728..2588)
                     /codon_start=1
                     /gene="bla"
                     /product="beta-lactamase"
                     /note="AmpR
                     confers resistance to ampicillin, carbenicillin, and 
                     related antibiotics"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
                     ELDLNSGKILESLRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
                     PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLATIGGPKELTAFLHNMGDHVTRLDRW
                     EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGSLLRSA
                     LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
                     LIKHW"
     promoter        complement(2589..2691)
                     /note="cat promoter
                     promoter of the E. coli cat gene"
ORIGIN
        1 ctttctgcta tggaggtcag gtatgattta aatggtcagt attgagcgat atctagagaa
       61 ttcgtcatag gagagacgca atacgcaaac cgcctctccc cgcgcgttgg ccgattcatt
      121 aatgcaggga tccggcttac taaaagccag ataacagtat gcgtatttgc gcgctgattt
      181 ttgcggtata agaatatata ctgatatgta tacccgaagt atgtcaaaaa gaggtatgct
      241 atgaagcagc gtattacagt gacagttgac agcgacagct atcagttgct caaggcatat
      301 atgatgtcaa tatctccggt ctggtaagca caaccatgca gaatgaagcc cgtcgtctgc
      361 gtgccgaacg ctggaaagcg gaaaatcagg aagggatggc tgaggtcgcc cggtttattg
      421 aaatgaacgg ctcttttgct gacgagaaca ggggctggtg aaatgcagtt taaggtttac
      481 acctataaaa gagagagccg ttatcgtctg tttgtggatg tacagagtga tattattgac
      541 acgcccgggc gacggatggt gatccccctg gccagtgcac gtctgctgtc agataaagtc
      601 ccccgtgaac tttacccggt ggtgcatatc ggggatgaaa gctggcgcat gatgaccacc
      661 gatatggcca gtgtgccggt ctccgttatc ggggaagaag tggctgatct cagccaccgc
      721 gaaaatgaca tcaaaaacgc cattaacctg atgttctggg gaatataagc tgatagtgct
      781 agtgtagatc gctactagag ccaggcatca aataaaacga aaggctcagt cgaaagactg
      841 ggcctttcgt tttatctgtt gtttgtcggt gaacgctctc tactagagtc acactggctc
      901 accttcgggt gggcctttct gcgtttatat actagtagcg gccgtctcaa cgataacgaa
      961 ttcaagcttg atatcattca ggacgagcct cagactccag cgtaactgga ctgcaatcaa
     1021 ctcactggct caccttcacg ggtgggcctt tcttcggtag aaaatcaaag gatcttcttg
     1081 agatcctttt tttctgcgcg taatctgctg cttgcaaaca aaaaaaccac cgctaccagc
     1141 ggtggtttgt ttgccggatc aagagctacc aactcttttt ccgaggtaac tggcttcagc
     1201 agagcgcaga taccaaatac tgttcttcta gtgtagccgt agttaggcca ccacttcaag
     1261 aactctgtag caccgcctac atacctcgct ctgctaatcc tgttaccagt ggctgctgcc
     1321 agtggcgata agtcgtgtct taccgggttg gactcaagac gatagttacc ggataaggcg
     1381 cagcggtcgg gctgaacggg gggttcgtgc acacagccca gcttggagcg aacgacctac
     1441 accgaactga gatacctaca gcgtgagcta tgagaaagcg ccacgcttcc cgaagggaga
     1501 aaggcggaca ggtatccggt aagcggcagg gtcggaacag gagagcgcac gagggagctt
     1561 ccagggggaa acgcctggta tctttatagt cctgtcgggt ttcgccacct ctgacttgag
     1621 catcgatttt tgtgatgctc gtcagggggg cggagcctat ggaaaaacgc cagcaacgca
     1681 gaaaggccca cccgaaggtg agccaggtga ttacatttgg gccctcatta ccaatgctta
     1741 atcagtgagg cacctatctc agcgatctgt ctatttcgtt catccatagt tgcctgactc
     1801 cccgtcgtgt agataactac gatgcgggag ggcttaccat ctggccccag tgctgcaatg
     1861 ataccgcgag aaccacgctc accggctcca gatttatcag caataaacca gccagccggg
     1921 agggccgagc gcagaagtga tcctgcaact ttatccgcct ccatccagtc tattaattgt
     1981 tgccgggaag ctagagtaag tagttcgcca gttaatagtt tgcgcaacgt tgttgccatt
     2041 gctacaggca tcgtggtgtc acgctcgtcg tttggtatgg cttcattcag ctccggttcc
     2101 caacgatcaa ggcgagttac atgatccccc atgttgtgca aaaaagcggt tagctccttc
     2161 ggtcctccga tcgttgccag aagtaagttg gccgcagtgt tatcactcat ggttatggca
     2221 gcactgcata attctcttac tgtcatgcca tccgtgagat gcttttctgt gactggtgag
     2281 tactcaacca agtcattctg agaatagtgt atgcggcgac cgagttgctc ttgcccggcg
     2341 tcaatacggg ataataccgc gccacatagc agaactttaa aagtgctcat cattggaaaa
     2401 cgttcttcgg ggcgtaaact ctcaaggatc ttaccgctgt tgagatccag ttcgatgtaa
     2461 cccactcgtg cacccaactg atcttcagca tcttttactt tcaccagcgt ttctgggtga
     2521 gcaaaaacag gaaggcaaaa tgccgcaaaa aagggaataa gggcgacacg gaaatgttga
     2581 atactcattt tagcttcctt agctcctgaa aatctcgata actcaaaaaa tacgcccggt
     2641 agtgatctta tttcattatg gtgaaagttg gaacctctta cgtgccgatc aagtcaaaag
     2701 cctccggtcg gaggcttttg a
//