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changeset 40:234e990e8e1d draft

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Uploaded
author testtool
date Mon, 24 Apr 2017 09:45:39 -0400
parents 925945cca45f
children 1ed398538e91
files GRsetFromGEO/GRsetFromGEO.R GRsetFromGEO/tool_dependencies.xml
diffstat 2 files changed, 4 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/GRsetFromGEO/GRsetFromGEO.R	Mon Apr 24 09:29:38 2017 -0400
+++ b/GRsetFromGEO/GRsetFromGEO.R	Mon Apr 24 09:45:39 2017 -0400
@@ -1,8 +1,5 @@
 require("minfi", quietly = TRUE)
-require("BiocGenerics", quietly = TRUE)
-require("data.table", quietly = TRUE)
 require("GEOquery", quietly = TRUE)
-require("rtracklayer", quietly = TRUE)
 require("FDb.InfiniumMethylation.hg19", quietly = TRUE)
 
 args <- commandArgs(trailingOnly = TRUE)
--- a/GRsetFromGEO/tool_dependencies.xml	Mon Apr 24 09:29:38 2017 -0400
+++ b/GRsetFromGEO/tool_dependencies.xml	Mon Apr 24 09:45:39 2017 -0400
@@ -269,6 +269,9 @@
                         <package>
                           https://bioarchive.galaxyproject.org/minfi_1.20.0.tar.gz
                       </package>
+                      <package>
+                        https://bioarchive.galaxyproject.org/GEOquery_2.20.0.tar.gz
+                    </package>
                   </action>
               </actions>
-            </tool_dependency>
\ No newline at end of file
+            </tool_dependency>