Mercurial > repos > testtool > get_geo
comparison GEO/getGEO.xml @ 35:0262f5edecb9 draft
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author | testtool |
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date | Thu, 09 Feb 2017 09:56:43 -0500 |
parents | 6025fa3bfc40 |
children | a266a7c268e9 |
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34:6025fa3bfc40 | 35:0262f5edecb9 |
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1 <tool id="GEO" name="getGEO" version="1.16.2"> | 1 <tool id="GEO" name="getGEO" version="1.16.2"> |
2 <?xml version='1.0' encoding='utf-8'?> | |
2 <requirements> | 3 <requirements> |
3 <requirement type="package" version="3.2.1">R</requirement> | 4 <requirement type="package" version="3.2.1">R</requirement> |
4 </requirements> | 5 </requirements> |
5 <stdio> | |
6 <exit_code> range="1:" level="fatal" </exit_code> | |
7 </stdio> | |
8 <command> Rscript $__tool_directory__/getGEO.R "$GSMTable" "$MetaTable" "$IlmnTable" "$gmTable"</command> | 6 <command> Rscript $__tool_directory__/getGEO.R "$GSMTable" "$MetaTable" "$IlmnTable" "$gmTable"</command> |
9 <inputs> | 7 <inputs> |
10 <param optional="false" format="csv" name="GSMTable" type="data" value="" help="GEO table of data." label="[required] GSMTable"> | 8 <param optional="false" format="csv" name="GSMTable" type="data" value="" help="GEO table of data." label="[required] GSMTable"> |
11 <validator> type="empty_field" message="This field is required."</validator> | 9 <validator type="empty_field" message="This field is required."/> |
12 </param> | 10 </param> |
13 </inputs> | 11 </inputs> |
14 <outputs> | 12 <outputs> |
15 <data> format="csv" name="MetaTable" label="MetaData.csv" </data> | 13 <data format="csv" name="MetaTable" label="MetaData.csv"/> |
16 <data> format="csv" name="IlmnTable" label="IlmnData.csv"</data> | 14 <data format="csv" name="IlmnTable" label="IlmnData.csv"/> |
17 <data> format="csv" name="gmTable" label="gmSet.csv"</data> | 15 <data format="csv" name="gmTable" label="gmSet.csv"/> |
18 </outputs> | 16 </outputs> |
19 <tests> | 17 <tests> |
20 <test> | 18 <test> |
21 <param name="test"> | 19 <param name="test"> |
22 <element name="test-data"> | 20 <element name="test-data"> |