Mercurial > repos > testtool > get_geo
view GEO/getGEO.xml @ 34:6025fa3bfc40 draft
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author | testtool |
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date | Thu, 09 Feb 2017 09:54:46 -0500 |
parents | 336f56093613 |
children | 0262f5edecb9 |
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<tool id="GEO" name="getGEO" version="1.16.2"> <requirements> <requirement type="package" version="3.2.1">R</requirement> </requirements> <stdio> <exit_code> range="1:" level="fatal" </exit_code> </stdio> <command> Rscript $__tool_directory__/getGEO.R "$GSMTable" "$MetaTable" "$IlmnTable" "$gmTable"</command> <inputs> <param optional="false" format="csv" name="GSMTable" type="data" value="" help="GEO table of data." label="[required] GSMTable"> <validator> type="empty_field" message="This field is required."</validator> </param> </inputs> <outputs> <data> format="csv" name="MetaTable" label="MetaData.csv" </data> <data> format="csv" name="IlmnTable" label="IlmnData.csv"</data> <data> format="csv" name="gmTable" label="gmSet.csv"</data> </outputs> <tests> <test> <param name="test"> <element name="test-data"> <collection type="data"> <element name="GSMTable" value="test-data/input.csv" /> </collection> </element> </param> <output format="csv" name="MetaTable" label="test-data/MetaTable.csv"/> <output format="csv" name="IlmnTable" label="test-data/IlmnTable.csv"/> <output format="csv" name="gmTable" label="test-data/gmTable.csv"/> </test> </tests> <help> **Description** </help> <citations> GEO </citations> </tool>