Mercurial > repos > testtool > get_geo

comparison GEO/getGEO.xml @ 34:6025fa3bfc40 draft

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author testtool
date Thu, 09 Feb 2017 09:54:46 -0500
parents 336f56093613
children 0262f5edecb9
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33:336f56093613 34:6025fa3bfc40
6 <exit_code> range="1:" level="fatal" </exit_code> 6 <exit_code> range="1:" level="fatal" </exit_code>
7 </stdio> 7 </stdio>
8 <command> Rscript $__tool_directory__/getGEO.R "$GSMTable" "$MetaTable" "$IlmnTable" "$gmTable"</command> 8 <command> Rscript $__tool_directory__/getGEO.R "$GSMTable" "$MetaTable" "$IlmnTable" "$gmTable"</command>
9 <inputs> 9 <inputs>
10 <param optional="false" format="csv" name="GSMTable" type="data" value="" help="GEO table of data." label="[required] GSMTable"> 10 <param optional="false" format="csv" name="GSMTable" type="data" value="" help="GEO table of data." label="[required] GSMTable">
11 <validator type="empty_field" message="This field is required."/> 11 <validator> type="empty_field" message="This field is required."</validator>
12 </param> 12 </param>
13 </inputs> 13 </inputs>
14 <outputs> 14 <outputs>
15 <data format="csv" name="MetaTable" label="MetaData.csv"/> 15 <data> format="csv" name="MetaTable" label="MetaData.csv" </data>
16 <data format="csv" name="IlmnTable" label="IlmnData.csv"/> 16 <data> format="csv" name="IlmnTable" label="IlmnData.csv"</data>
17 <data format="csv" name="gmTable" label="gmSet.csv"/> 17 <data> format="csv" name="gmTable" label="gmSet.csv"</data>
18 </outputs> 18 </outputs>
19 <tests> 19 <tests>
20 <test> 20 <test>
21 <param name="test"> 21 <param name="test">
22 <element name="test-data"> 22 <element name="test-data">