Mercurial > repos > testtool > get_geo
comparison GEO/getGEO.xml @ 33:336f56093613 draft
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author | testtool |
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date | Thu, 09 Feb 2017 09:13:00 -0500 |
parents | 2b223a449cf6 |
children | 6025fa3bfc40 |
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32:2b223a449cf6 | 33:336f56093613 |
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1 <tool id="GEO" name="getGEO" version="1.16.2"> | 1 <tool id="GEO" name="getGEO" version="1.16.2"> |
2 <?xml version='1.0' encoding='utf-8'?> | |
3 <requirements> | 2 <requirements> |
4 <requirement type="package" version="3.2.1">R</requirement> | 3 <requirement type="package" version="3.2.1">R</requirement> |
5 </requirements> | 4 </requirements> |
6 <stdio> | 5 <stdio> |
7 <exit_code range="1:" level="fatal" /> | 6 <exit_code> range="1:" level="fatal" </exit_code> |
8 </stdio> | 7 </stdio> |
9 <command> Rscript $__tool_directory__/getGEO.R "$GSMTable" "$MetaTable" "$IlmnTable" "$gmTable"</command> | 8 <command> Rscript $__tool_directory__/getGEO.R "$GSMTable" "$MetaTable" "$IlmnTable" "$gmTable"</command> |
10 <inputs> | 9 <inputs> |
11 <param optional="false" format="csv" name="GSMTable" type="data" value="" help="GEO table of data." label="[required] GSMTable"> | 10 <param optional="false" format="csv" name="GSMTable" type="data" value="" help="GEO table of data." label="[required] GSMTable"> |
12 <validator type="empty_field" message="This field is required."/> | 11 <validator type="empty_field" message="This field is required."/> |