Mercurial > repos > testtool > get_geo

comparison GEO/getGEO.xml @ 33:336f56093613 draft

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author testtool
date Thu, 09 Feb 2017 09:13:00 -0500
parents 2b223a449cf6
children 6025fa3bfc40
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32:2b223a449cf6 33:336f56093613
1 <tool id="GEO" name="getGEO" version="1.16.2"> 1 <tool id="GEO" name="getGEO" version="1.16.2">
2 <?xml version='1.0' encoding='utf-8'?>
3 <requirements> 2 <requirements>
4 <requirement type="package" version="3.2.1">R</requirement> 3 <requirement type="package" version="3.2.1">R</requirement>
5 </requirements> 4 </requirements>
6 <stdio> 5 <stdio>
7 <exit_code range="1:" level="fatal" /> 6 <exit_code> range="1:" level="fatal" </exit_code>
8 </stdio> 7 </stdio>
9 <command> Rscript $__tool_directory__/getGEO.R "$GSMTable" "$MetaTable" "$IlmnTable" "$gmTable"</command> 8 <command> Rscript $__tool_directory__/getGEO.R "$GSMTable" "$MetaTable" "$IlmnTable" "$gmTable"</command>
10 <inputs> 9 <inputs>
11 <param optional="false" format="csv" name="GSMTable" type="data" value="" help="GEO table of data." label="[required] GSMTable"> 10 <param optional="false" format="csv" name="GSMTable" type="data" value="" help="GEO table of data." label="[required] GSMTable">
12 <validator type="empty_field" message="This field is required."/> 11 <validator type="empty_field" message="This field is required."/>