Mercurial > repos > testtool > get_geo
comparison GEO/getGEO.xml @ 31:f81cbc34657c draft
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author | testtool |
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date | Thu, 09 Feb 2017 08:42:04 -0500 |
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children | 2b223a449cf6 |
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30:4bb463a26542 | 31:f81cbc34657c |
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1 <tool id="GEO" name="getGEO" version="1.16.2"> | |
2 <?xml version='1.0' encoding='utf-8'?> | |
3 <requirements> | |
4 <requirement type="package" version="3.2.1">R</requirement> | |
5 </requirements> | |
6 <stdio> | |
7 <exit_code range="1:"/> | |
8 </stdio> | |
9 <command> Rscript $__tool_directory__/getGEO.R "$GSMTable" "$MetaTable" "$IlmnTable" "$gmTable"</command> | |
10 <inputs> | |
11 <param optional="false" format="csv" name="GSMTable" type="data" value="" help="GEO table of data." label="[required] GSMTable"> | |
12 <validator type="empty_field" message="This field is required."/> | |
13 </param> | |
14 </inputs> | |
15 <outputs> | |
16 <data format="csv" name="MetaTable" label="MetaData.csv"/> | |
17 <data format="csv" name="IlmnTable" label="IlmnData.csv"/> | |
18 <data format="csv" name="gmTable" label="gmSet.csv"/> | |
19 </outputs> | |
20 <tests> | |
21 <test> | |
22 <param name="test"> | |
23 <element name="test-data"> | |
24 <collection type="data"> | |
25 <element name="GSMTable" value="test-data/input.csv" /> | |
26 </collection> | |
27 </element> | |
28 </param> | |
29 <output format="csv" name="MetaTable" label="test-data/MetaTable.csv"/> | |
30 <output format="csv" name="IlmnTable" label="test-data/IlmnTable.csv"/> | |
31 <output format="csv" name="gmTable" label="test-data/gmTable.csv"/> | |
32 </test> | |
33 </tests> | |
34 <help> | |
35 **Description** | |
36 </help> | |
37 <citations> | |
38 GEO | |
39 </citations> | |
40 </tool> |