Mercurial > repos > testtool > get_geo
changeset 31:f81cbc34657c draft
Uploaded
author | testtool |
---|---|
date | Thu, 09 Feb 2017 08:42:04 -0500 |
parents | 4bb463a26542 |
children | 2b223a449cf6 |
files | GEO/getGEO.xml |
diffstat | 1 files changed, 40 insertions(+), 0 deletions(-) [+] |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/GEO/getGEO.xml Thu Feb 09 08:42:04 2017 -0500 @@ -0,0 +1,40 @@ +<tool id="GEO" name="getGEO" version="1.16.2"> + <?xml version='1.0' encoding='utf-8'?> + <requirements> + <requirement type="package" version="3.2.1">R</requirement> + </requirements> +<stdio> +<exit_code range="1:"/> +</stdio> + <command> Rscript $__tool_directory__/getGEO.R "$GSMTable" "$MetaTable" "$IlmnTable" "$gmTable"</command> + <inputs> + <param optional="false" format="csv" name="GSMTable" type="data" value="" help="GEO table of data." label="[required] GSMTable"> + <validator type="empty_field" message="This field is required."/> + </param> + </inputs> + <outputs> + <data format="csv" name="MetaTable" label="MetaData.csv"/> + <data format="csv" name="IlmnTable" label="IlmnData.csv"/> + <data format="csv" name="gmTable" label="gmSet.csv"/> + </outputs> + <tests> + <test> + <param name="test"> + <element name="test-data"> + <collection type="data"> + <element name="GSMTable" value="test-data/input.csv" /> + </collection> + </element> + </param> + <output format="csv" name="MetaTable" label="test-data/MetaTable.csv"/> + <output format="csv" name="IlmnTable" label="test-data/IlmnTable.csv"/> + <output format="csv" name="gmTable" label="test-data/gmTable.csv"/> + </test> + </tests> + <help> +**Description** +</help> +<citations> +GEO +</citations> +</tool>