Mercurial > repos > testtool > get_geo

changeset 30:4bb463a26542 draft

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Deleted selected files
author testtool
date Thu, 09 Feb 2017 08:13:06 -0500
parents eb1a8cedf6c5
children f81cbc34657c
files GEO/getGEO.xml
diffstat 1 files changed, 0 insertions(+), 40 deletions(-) [+]
line wrap: on
line diff
--- a/GEO/getGEO.xml	Wed Feb 08 09:13:39 2017 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,40 +0,0 @@
-<tool id="GEO" name="getGEO" version="1.16.2">
-  <?xml version='1.0' encoding='utf-8'?>
-  <requirements>
-         <requirement type="package" version="3.2.1">R</requirement>
-     </requirements>
-<stdio>
-   <exit_code range="1:" />
-</stdio>
-  <command> Rscript $__tool_directory__/getGEO.R "$GSMTable" "$MetaTable" "$IlmnTable" "$gmTable"</command>
-  <inputs>
-    <param optional="false" format="csv" name="GSMTable" type="data" value="" help="GEO table of data." label="[required] GSMTable">
-      <validator type="empty_field" message="This field is required."/>
-    </param>
-  </inputs>
-  <outputs>
-    <data format="csv" name="MetaTable" label="MetaData.csv"/>
-    <data format="csv" name="IlmnTable" label="IlmnData.csv"/>
-    <data format="csv" name="gmTable" label="gmSet.csv"/>
-  </outputs>
-  <tests>
-    <test>
-      <param name="test">
-      <element name="test-data">
-          <collection type="data">
-              <element name="GSMTable" value="test-data/input.csv" />
-          </collection>
-        </element>
-        </param>
-        <output format="csv" name="MetaTable" label="test-data/MetaTable.csv"/>
-        <output format="csv" name="IlmnTable" label="test-data/IlmnTable.csv"/>
-        <output format="csv" name="gmTable" label="test-data/gmTable.csv"/>
-        </test>
-    </tests>
-  <help>
-**Description**
-</help>
-<citations>
-GEO
-</citations>
-</tool>