Mercurial > repos > testtool > get_gr_set
annotate GRsetFromGEO.xml @ 23:1bdfe0d48de8 draft
Uploaded
| author | testtool |
|---|---|
| date | Mon, 10 Jul 2017 08:58:11 -0400 |
| parents | |
| children |
| rev | line source |
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| 23 | 1 <tool id="getGRset" name="GRsetFromGEO"> |
| 2 <description>downloads data from GEO</description> | |
| 3 <command>Rscript $__tool_directory__/GRsetFromGEO.R $input output.RData</command> | |
| 4 <inputs> | |
| 5 <param format="text" name="input" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/> | |
| 6 </inputs> | |
| 7 <outputs> | |
| 8 <data format="RDdata" name="output" label="output.RData" /> | |
| 9 </outputs> | |
| 10 <help> | |
| 11 **What it does** | |
| 12 This R-based tool downloads data from GEO using getGEO from the GEOquery package and then returns a GenomicRatioSet object | |
| 13 **Input** | |
| 14 The GSE ID of the dataset to be downloaded from GEO "e.g. 'GSE51547'" | |
| 15 **Output** | |
| 16 GenomicRatioSet object | |
| 17 </help> | |
| 18 </tool> |