Mercurial > repos > testtool > get_gr_set

annotate GRsetFromGEO/.Rhistory @ 20:40d7bdac6322 draft

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author testtool
date Mon, 03 Jul 2017 07:13:53 -0400
parents 7511130b5068
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1 require("minfi", quietly = TRUE)
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2 ?require
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3 require("minfi", quietly = TRUE)
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4 minfi
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5 as.data.frame(GRset)
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6 GRset <- getGenomicRatioSetFromGEO(GSE)
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7 getGenomicRatioSetFromGEO
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8 require("minfi", quietly = TRUE)
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9 options(warn = -1)
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10 options("download.file.method"="wget")
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11 args <- commandArgs(trailingOnly = TRUE)
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12 GSE = args[1]
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13 output = args[2]
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14 GRset <- getGenomicRatioSetFromGEO(GSE)
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15 save(GRset,file = output)
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16 sessionInfo()