Mercurial > repos > testtool > get_gr_set

annotate getGRsetFromGEO/.Rhistory @ 0:457c1fc71f64 draft

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author testtool
date Sun, 11 Jun 2017 06:21:37 -0400
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testtool
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1 require("minfi", quietly = TRUE)
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2 ?require
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3 require("minfi", quietly = TRUE)
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4 minfi
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5 as.data.frame(GRset)
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6 GRset <- getGenomicRatioSetFromGEO(GSE)
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7 getGenomicRatioSetFromGEO
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8 require("minfi", quietly = TRUE)
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9 options(warn = -1)
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10 options("download.file.method"="wget")
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11 args <- commandArgs(trailingOnly = TRUE)
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12 GSE = args[1]
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13 output = args[2]
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14 GRset <- getGenomicRatioSetFromGEO(GSE)
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15 save(GRset,file = output)
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16 sessionInfo()