Mercurial > repos > testtool > get_gr_set

annotate GRsetFromGEO/GRsetFromGEO.R @ 62:8673a0225e2b draft

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author testtool
date Thu, 11 Jan 2018 12:51:04 -0500
parents 2382697aad09
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1 require(minfi, quietly = TRUE)
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2 require(IlluminaHumanMethylation450kanno.ilmn12.hg19, quietly = TRUE)
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4 options('GEOquery.inmemory.gpl'=TRUE)
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5 options('download.file.method.GEOquery' = 'libcurl')
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7 options(warn = -1)
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9 args <- commandArgs(trailingOnly = TRUE)
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10 input = args[1]
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11 output = args[2]
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13 GRset <- getGenomicRatioSetFromGEO(input)
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15 save(GRset, file = output)
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