Mercurial > repos > testtool > get_gr_set

annotate GRsetFromGEO/GRsetFromGEO.R @ 55:e23909ae6676 draft

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author testtool
date Thu, 10 Aug 2017 06:26:46 -0400
parents 5752f23e451f
children d7cf4a35f827
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1 options(warn = -1)
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2 options('download.file.method.GEOquery' = 'wget')
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3 options('GEOquery.inmemory.gpl'=FALSE)
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6 args <- commandArgs(trailingOnly = TRUE)
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7 input = args[1]
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8 output = args[2]
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10 GRset <- minfi::getGenomicRatioSetFromGEO(input)
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12 save(GRset,file = output)
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