Mercurial > repos > testtool > get_gr_set
comparison getGRsetFromGEO/.Rhistory @ 0:457c1fc71f64 draft
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| author | testtool |
|---|---|
| date | Sun, 11 Jun 2017 06:21:37 -0400 |
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| children |
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| -1:000000000000 | 0:457c1fc71f64 |
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| 1 require("minfi", quietly = TRUE) | |
| 2 ?require | |
| 3 require("minfi", quietly = TRUE) | |
| 4 minfi | |
| 5 as.data.frame(GRset) | |
| 6 GRset <- getGenomicRatioSetFromGEO(GSE) | |
| 7 getGenomicRatioSetFromGEO | |
| 8 require("minfi", quietly = TRUE) | |
| 9 options(warn = -1) | |
| 10 options("download.file.method"="wget") | |
| 11 args <- commandArgs(trailingOnly = TRUE) | |
| 12 GSE = args[1] | |
| 13 output = args[2] | |
| 14 GRset <- getGenomicRatioSetFromGEO(GSE) | |
| 15 save(GRset,file = output) | |
| 16 sessionInfo() |