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view GRsetFromGEO/GRsetFromGEO.R @ 21:07f0fc6e4d1d draft

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author testtool
date Mon, 03 Jul 2017 07:14:02 -0400
parents 3431c6054674
children 71a8c9b37d45
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require("minfi", quietly = TRUE)

options(warn = -1)
options('download.file.method.GEOquery' = 'libcurl')
options('GEOquery.inmemory.gpl'=FALSE)


args <- commandArgs(trailingOnly = TRUE)
input = args[1] 
output = args[2] 

GRset <- getGenomicRatioSetFromGEO(input)

save(GRset,file = output)