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view GRsetFromGEO/GRsetFromGEO.R @ 9:6908c2998731 draft

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author testtool
date Tue, 13 Jun 2017 07:03:10 -0400
parents 5b1a9d86338c
children 8fb59470e294
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require("minfi", quietly = TRUE)

options(warn = -1)
options('download.file.method.GEOquery' = 'libcurl')

args <- commandArgs(trailingOnly = TRUE)
GSE = args[1] 
output = args[2] 

GRset <- getGenomicRatioSetFromGEO(GSE)

save(GRset,file = output)