Mercurial > repos > testtool > get_gr_set

view GRsetFromGEO/GRsetFromGEO.R @ 10:8fb59470e294 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author testtool
date Tue, 13 Jun 2017 07:30:46 -0400
parents 6908c2998731
children bfc8b961afe1
line wrap: on
line source

require("minfi", quietly = TRUE)

options(warn = -1)
options('download.file.method.GEOquery' = 'wget')

args <- commandArgs(trailingOnly = TRUE)
GSE = args[1] 
output = args[2] 

GRset <- getGenomicRatioSetFromGEO(GSE)

save(GRset,file = output)