Mercurial > repos > testtool > get_gr_set

changeset 11:bfc8b961afe1 draft

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Uploaded
author testtool
date Tue, 13 Jun 2017 08:24:22 -0400
parents 8fb59470e294
children 49fb5138448c
files GRsetFromGEO/GRsetFromGEO.R GRsetFromGEO/GRsetFromGEO.xml
diffstat 2 files changed, 2 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/GRsetFromGEO/GRsetFromGEO.R	Tue Jun 13 07:30:46 2017 -0400
+++ b/GRsetFromGEO/GRsetFromGEO.R	Tue Jun 13 08:24:22 2017 -0400
@@ -1,7 +1,7 @@
 require("minfi", quietly = TRUE)
 
 options(warn = -1)
-options('download.file.method.GEOquery' = 'wget')
+options('download.file.method'='wget')
 
 args <- commandArgs(trailingOnly = TRUE)
 GSE = args[1] 
--- a/GRsetFromGEO/GRsetFromGEO.xml	Tue Jun 13 07:30:46 2017 -0400
+++ b/GRsetFromGEO/GRsetFromGEO.xml	Tue Jun 13 08:24:22 2017 -0400
@@ -1,6 +1,7 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <tool id="GetGEO" name="GRsetFromGEO" version="1.16.2">
 <requirements>
+<requirement type="package" version="1.20.0">gnu-wget</requirement>
 <requirement type="package" version="1.20.0">bioconductor-minfi</requirement>
 </requirements>
 <stdio>