Mercurial > repos > testtool > get_gr_set
changeset 56:d7cf4a35f827 draft
Uploaded
| author | testtool |
|---|---|
| date | Thu, 10 Aug 2017 06:42:47 -0400 |
| parents | e23909ae6676 |
| children | 119dad795f32 |
| files | GRsetFromGEO/GRsetFromGEO.R |
| diffstat | 1 files changed, 3 insertions(+), 4 deletions(-) [+] |
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--- a/GRsetFromGEO/GRsetFromGEO.R Thu Aug 10 06:26:46 2017 -0400 +++ b/GRsetFromGEO/GRsetFromGEO.R Thu Aug 10 06:42:47 2017 -0400 @@ -1,13 +1,12 @@ +require(minfi, quietly = TRUE) + options(warn = -1) -options('download.file.method.GEOquery' = 'wget') -options('GEOquery.inmemory.gpl'=FALSE) - args <- commandArgs(trailingOnly = TRUE) input = args[1] output = args[2] -GRset <- minfi::getGenomicRatioSetFromGEO(input) +GRset <- getGenomicRatioSetFromGEO(input) save(GRset,file = output)