annotate getGSMdata/getGSMdata.xml @ 17:536a5b235428 draft

Uploaded
author testtool
date Mon, 06 Feb 2017 09:07:58 -0500
parents 5eb8924481df
children afccca17b66b
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
8
5e1d49abfc99 Uploaded
testtool
parents:
diff changeset
1 <tool id="GSM" name="getGSMdata" version="1.16.2">
5e1d49abfc99 Uploaded
testtool
parents:
diff changeset
2 <requirements>
17
536a5b235428 Uploaded
testtool
parents: 16
diff changeset
3 <requirement type="package" version="3.2.1">package_r_3_2_1</requirement>
16
5eb8924481df Uploaded
testtool
parents: 15
diff changeset
4 </requirements>
8
5e1d49abfc99 Uploaded
testtool
parents:
diff changeset
5 <stdio>
5e1d49abfc99 Uploaded
testtool
parents:
diff changeset
6 <exit_code range="1:" />
5e1d49abfc99 Uploaded
testtool
parents:
diff changeset
7 </stdio>
5e1d49abfc99 Uploaded
testtool
parents:
diff changeset
8 <command> Rscript $__tool_directory__/getGSMdata.R "$GSE" "$GSMTable" </command>
5e1d49abfc99 Uploaded
testtool
parents:
diff changeset
9 <inputs>
5e1d49abfc99 Uploaded
testtool
parents:
diff changeset
10 <param name="GSE" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/>
5e1d49abfc99 Uploaded
testtool
parents:
diff changeset
11 </inputs>
5e1d49abfc99 Uploaded
testtool
parents:
diff changeset
12 <outputs>
5e1d49abfc99 Uploaded
testtool
parents:
diff changeset
13 <data format="txt" name="GSMTable" label="GSMTable.txt"/>
5e1d49abfc99 Uploaded
testtool
parents:
diff changeset
14 </outputs>
5e1d49abfc99 Uploaded
testtool
parents:
diff changeset
15 <tests>
5e1d49abfc99 Uploaded
testtool
parents:
diff changeset
16 <test>
5e1d49abfc99 Uploaded
testtool
parents:
diff changeset
17 <param name="test">
5e1d49abfc99 Uploaded
testtool
parents:
diff changeset
18 <element name="test-data">
5e1d49abfc99 Uploaded
testtool
parents:
diff changeset
19 <collection type="data">
5e1d49abfc99 Uploaded
testtool
parents:
diff changeset
20 <element name="GSE" value="GSE51547"/>
5e1d49abfc99 Uploaded
testtool
parents:
diff changeset
21 </collection>
5e1d49abfc99 Uploaded
testtool
parents:
diff changeset
22 </element>
5e1d49abfc99 Uploaded
testtool
parents:
diff changeset
23 </param>
5e1d49abfc99 Uploaded
testtool
parents:
diff changeset
24 <output format="txt" name="GSMTable" label="test-data/GSMTable.txt"/>
5e1d49abfc99 Uploaded
testtool
parents:
diff changeset
25 </test>
5e1d49abfc99 Uploaded
testtool
parents:
diff changeset
26 </tests>
5e1d49abfc99 Uploaded
testtool
parents:
diff changeset
27 <help>
5e1d49abfc99 Uploaded
testtool
parents:
diff changeset
28 **Description**
5e1d49abfc99 Uploaded
testtool
parents:
diff changeset
29 </help>
5e1d49abfc99 Uploaded
testtool
parents:
diff changeset
30 <citations>
5e1d49abfc99 Uploaded
testtool
parents:
diff changeset
31 GEO
5e1d49abfc99 Uploaded
testtool
parents:
diff changeset
32 </citations>
5e1d49abfc99 Uploaded
testtool
parents:
diff changeset
33 </tool>