Mercurial > repos > thanhlv > fargene

annotate test-data/contigs/hmmsearchresults/retrieved-genes-class_B_1_2-hmmsearched.out @ 0:6f78bc71eb12 draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/fargene commit 2e1b1f737f3a3d7cfc6350c6936fbb0bd84a5dad-dirty
author thanhlv
date Fri, 19 Jul 2019 08:42:37 -0400
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6f78bc71eb12 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/fargene commit 2e1b1f737f3a3d7cfc6350c6936fbb0bd84a5dad-dirty
thanhlv
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1 # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord
6f78bc71eb12 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/fargene commit 2e1b1f737f3a3d7cfc6350c6936fbb0bd84a5dad-dirty
thanhlv
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2 # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target
6f78bc71eb12 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/fargene commit 2e1b1f737f3a3d7cfc6350c6936fbb0bd84a5dad-dirty
thanhlv
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3 # ------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- ---------------------
6f78bc71eb12 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/fargene commit 2e1b1f737f3a3d7cfc6350c6936fbb0bd84a5dad-dirty
thanhlv
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4 klebsiella_plasmid_FN396876.1_seq1_4 - 261 b1_b2_70_centroids-aligned - 248 3.1e-84 270.9 0.0 1 1 5.6e-85 3.4e-84 270.7 0.0 7 244 7 258 1 260 0.94 -
6f78bc71eb12 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/fargene commit 2e1b1f737f3a3d7cfc6350c6936fbb0bd84a5dad-dirty
thanhlv
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5 #
6f78bc71eb12 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/fargene commit 2e1b1f737f3a3d7cfc6350c6936fbb0bd84a5dad-dirty
thanhlv
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6 # Program: hmmsearch
6f78bc71eb12 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/fargene commit 2e1b1f737f3a3d7cfc6350c6936fbb0bd84a5dad-dirty
thanhlv
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7 # Version: 3.2.1 (June 2018)
6f78bc71eb12 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/fargene commit 2e1b1f737f3a3d7cfc6350c6936fbb0bd84a5dad-dirty
thanhlv
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8 # Pipeline mode: SEARCH
6f78bc71eb12 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/fargene commit 2e1b1f737f3a3d7cfc6350c6936fbb0bd84a5dad-dirty
thanhlv
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9 # Query file: /home/ubuntu/data/miniconda2/envs/fargene/lib/python2.7/site-packages/fargene_analysis/models/class_B_1_2.hmm
6f78bc71eb12 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/fargene commit 2e1b1f737f3a3d7cfc6350c6936fbb0bd84a5dad-dirty
thanhlv
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10 # Target file: /home/ubuntu/data/fargene/tutorial/tutorialdata/tutorial_output_2/tmpdir/retrieved-translated.fasta
6f78bc71eb12 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/fargene commit 2e1b1f737f3a3d7cfc6350c6936fbb0bd84a5dad-dirty
thanhlv
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11 # Option settings: hmmsearch --domtblout /home/ubuntu/data/fargene/tutorial/tutorialdata/tutorial_output_2/hmmsearchresults/retrieved-genes-class_B_1_2-hmmsearched.out -E 1000 --domE 1000 /home/ubuntu/data/miniconda2/envs/fargene/lib/python2.7/site-packages/fargene_analysis/models/class_B_1_2.hmm /home/ubuntu/data/fargene/tutorial/tutorialdata/tutorial_output_2/tmpdir/retrieved-translated.fasta
6f78bc71eb12 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/fargene commit 2e1b1f737f3a3d7cfc6350c6936fbb0bd84a5dad-dirty
thanhlv
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12 # Current dir: /home/ubuntu/data/fargene/tutorial/tutorialdata
6f78bc71eb12 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/fargene commit 2e1b1f737f3a3d7cfc6350c6936fbb0bd84a5dad-dirty
thanhlv
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13 # Date: Wed Jul 17 13:17:48 2019
6f78bc71eb12 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/fargene commit 2e1b1f737f3a3d7cfc6350c6936fbb0bd84a5dad-dirty
thanhlv
parents:
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14 # [ok]