Mercurial > repos > thanhlv > fargene
diff test-data/contigs/hmmsearchresults/retrieved-genes-class_B_1_2-hmmsearched.out @ 0:6f78bc71eb12 draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/fargene commit 2e1b1f737f3a3d7cfc6350c6936fbb0bd84a5dad-dirty
| author | thanhlv |
|---|---|
| date | Fri, 19 Jul 2019 08:42:37 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/contigs/hmmsearchresults/retrieved-genes-class_B_1_2-hmmsearched.out Fri Jul 19 08:42:37 2019 -0400 @@ -0,0 +1,14 @@ +# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord +# target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target +# ------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- +klebsiella_plasmid_FN396876.1_seq1_4 - 261 b1_b2_70_centroids-aligned - 248 3.1e-84 270.9 0.0 1 1 5.6e-85 3.4e-84 270.7 0.0 7 244 7 258 1 260 0.94 - +# +# Program: hmmsearch +# Version: 3.2.1 (June 2018) +# Pipeline mode: SEARCH +# Query file: /home/ubuntu/data/miniconda2/envs/fargene/lib/python2.7/site-packages/fargene_analysis/models/class_B_1_2.hmm +# Target file: /home/ubuntu/data/fargene/tutorial/tutorialdata/tutorial_output_2/tmpdir/retrieved-translated.fasta +# Option settings: hmmsearch --domtblout /home/ubuntu/data/fargene/tutorial/tutorialdata/tutorial_output_2/hmmsearchresults/retrieved-genes-class_B_1_2-hmmsearched.out -E 1000 --domE 1000 /home/ubuntu/data/miniconda2/envs/fargene/lib/python2.7/site-packages/fargene_analysis/models/class_B_1_2.hmm /home/ubuntu/data/fargene/tutorial/tutorialdata/tutorial_output_2/tmpdir/retrieved-translated.fasta +# Current dir: /home/ubuntu/data/fargene/tutorial/tutorialdata +# Date: Wed Jul 17 13:17:48 2019 +# [ok]