Mercurial > repos > thanhlv > hamronization

annotate test-data/hamronized_abricate.tsv @ 0:5fca34360c12 draft default tip

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"planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/hamronization commit f4357e288c6ab3d1abf0dd8a8b4ccee72cbf1924-dirty"
author thanhlv
date Tue, 02 Feb 2021 21:18:52 +0000
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5fca34360c12 "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/hamronization commit f4357e288c6ab3d1abf0dd8a8b4ccee72cbf1924-dirty"
thanhlv
parents:
diff changeset
1 input_file_name gene_symbol gene_name reference_database_id reference_database_version reference_accession analysis_software_name analysis_software_version sequence_identity input_sequence_id input_protein_start input_protein_stop input_gene_start input_gene_stop reference_protein_start reference_protein_stop reference_gene_start reference_gene_stop strand_orientation coverage_depth coverage_percentage coverage_ratio reference_gene_length reference_protein_length input_gene_length input_protein_length drug_class antimicrobial_agent resistance_mechanism
5fca34360c12 "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/hamronization commit f4357e288c6ab3d1abf0dd8a8b4ccee72cbf1924-dirty"
thanhlv
parents:
diff changeset
2 GCF_010120755.1_ASM1012075v1_genomic eat(A) ABC-F type ribosomal protection protein Eat(A) ncbi db_v_1 NG_047762.1 abricate tool_v_1 100.0 NZ_CP039729.1 656118 657620 + 100.0 PLEUROMUTILIN
5fca34360c12 "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/hamronization commit f4357e288c6ab3d1abf0dd8a8b4ccee72cbf1924-dirty"
thanhlv
parents:
diff changeset
3 GCF_010120755.1_ASM1012075v1_genomic aacA-ENT1 aminoglycoside 6'-N-acetyltransferase ncbi db_v_1 NG_052371.1 abricate tool_v_1 100.0 NZ_CP039729.1 2163439 2163987 - 100.0 AMINOGLYCOSIDE
5fca34360c12 "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/hamronization commit f4357e288c6ab3d1abf0dd8a8b4ccee72cbf1924-dirty"
thanhlv
parents:
diff changeset
4 GCF_010120755.1_ASM1012075v1_genomic msr(C) ABC-F type ribosomal protection protein Msr(C) ncbi db_v_1 NG_048003.1 abricate tool_v_1 98.92 NZ_CP039729.1 2564038 2565516 - 100.0 MACROLIDE
5fca34360c12 "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/hamronization commit f4357e288c6ab3d1abf0dd8a8b4ccee72cbf1924-dirty"
thanhlv
parents:
diff changeset
5 GCF_010120755.1_ASM1012075v1_genomic vanX-M D-Ala-D-Ala dipeptidase VanX-M ncbi db_v_1 NG_048495.1 abricate tool_v_1 100.0 NZ_CP039730.1 43619 44197 - 95.07 VANCOMYCIN
5fca34360c12 "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/hamronization commit f4357e288c6ab3d1abf0dd8a8b4ccee72cbf1924-dirty"
thanhlv
parents:
diff changeset
6 GCF_010120755.1_ASM1012075v1_genomic vanM D-alanine--(R)-lactate ligase VanM ncbi db_v_1 NG_048396.1 abricate tool_v_1 100.0 NZ_CP039730.1 44203 45234 - 100.0 VANCOMYCIN
5fca34360c12 "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/hamronization commit f4357e288c6ab3d1abf0dd8a8b4ccee72cbf1924-dirty"
thanhlv
parents:
diff changeset
7 GCF_010120755.1_ASM1012075v1_genomic vanH-M D-lactate dehydrogenase VanH-M ncbi db_v_1 NG_048388.1 abricate tool_v_1 100.0 NZ_CP039730.1 45227 46207 - 100.0 VANCOMYCIN
5fca34360c12 "planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/hamronization commit f4357e288c6ab3d1abf0dd8a8b4ccee72cbf1924-dirty"
thanhlv
parents:
diff changeset
8 GCF_010120755.1_ASM1012075v1_genomic vanS-M VanM-type vancomycin resistance histidine kinase VanS ncbi db_v_1 NG_048450.1 abricate tool_v_1 100.0 NZ_CP039730.1 47306 48418 - 100.0 VANCOMYCIN