Mercurial > repos > thomaswollmann > colocalization_viz
comparison colocalization_viz.xml @ 0:9174e8eaa1e1 draft default tip
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/colocalization_viz/ commit d93e1dd276027cfc3fb518236110395a23d96f66
| author | thomaswollmann |
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| date | Wed, 16 Jan 2019 15:33:42 -0500 |
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| -1:000000000000 | 0:9174e8eaa1e1 |
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| 1 <?xml version="1.0"?> | |
| 2 <tool name="Colocalization" id="ip_colocalization" version="0.0.6"> | |
| 3 <description>Colocalization of two segmentation maps</description> | |
| 4 <requirements> | |
| 5 <requirement type="package" version="0.14.0">scikit-image</requirement> | |
| 6 <requirement type="package" version="1.15.4">numpy</requirement> | |
| 7 </requirements> | |
| 8 <command> | |
| 9 <![CDATA[ | |
| 10 python '$__tool_directory__/colocalization_viz.py' '$input_mask1' '$input_mask2' ./tmp.png | |
| 11 && mv ./tmp.png '$output' | |
| 12 ]]> | |
| 13 </command> | |
| 14 <inputs> | |
| 15 <param name="input_mask1" type="data" format="tiff" label="Mask1 Source File" /> | |
| 16 <param name="input_mask2" type="data" format="tiff" label="Mask2 Source File" /> | |
| 17 </inputs> | |
| 18 <outputs> | |
| 19 <data format="png" name="output" /> | |
| 20 </outputs> | |
| 21 <tests> | |
| 22 <test> | |
| 23 <param name="input_mask1" value="sample1.tiff"/> | |
| 24 <param name="input_mask2" value="sample2.tiff"/> | |
| 25 <output name="output" value="out.png" ftype="png" compare="sim_size"/> | |
| 26 </test> | |
| 27 </tests> | |
| 28 <help> | |
| 29 This tool overlays two segmentation maps and displays the colocalization results. | |
| 30 </help> | |
| 31 <citations> | |
| 32 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> | |
| 33 </citations> | |
| 34 </tool> |