Mercurial > repos > thomaswollmann > detection_viz

comparison detection_viz.xml @ 1:ff66bae1f7f8 draft default tip

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/detection_viz/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
author thomaswollmann
date Mon, 07 Jan 2019 05:36:36 -0500
parents 629d9e8ca64c
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0:629d9e8ca64c 1:ff66bae1f7f8
4 <requirement type="package" version="0.14.1" >scikit-image</requirement> 4 <requirement type="package" version="0.14.1" >scikit-image</requirement>
5 <requirement type="package" version="3.0.2" >matplotlib</requirement> 5 <requirement type="package" version="3.0.2" >matplotlib</requirement>
6 </requirements> 6 </requirements>
7 <command> 7 <command>
8 <![CDATA[ 8 <![CDATA[
9 python '$__tool_directory__/detection_viz.py' '$input' '$output' --stroke_size $thickness --circle_radius $circle_radius $tp $fn $fp 9 python '$__tool_directory__/detection_viz.py' '$input' ./tmp.png
10 ]]> 10 --stroke_size $thickness --circle_radius $circle_radius $tp $fn $fp
11 && mv ./tmp.png '$output'
12 ]]>
11 </command> 13 </command>
12 <inputs> 14 <inputs>
13 <param name="input" type="data" format="tiff,png,jpg,bmp" label="Binary Image File"/> 15 <param name="input" type="data" format="tiff,png,jpg,bmp" label="Binary Image File"/>
14 <param name="tp" type="boolean" checked="false" falsevalue="" truevalue="--tp"/> 16 <param name="tp" type="boolean" checked="false" falsevalue="" truevalue="--tp"/>
15 <param name="fn" type="boolean" checked="false" falsevalue="" truevalue="--fn"/> 17 <param name="fn" type="boolean" checked="false" falsevalue="" truevalue="--fn"/>