Mercurial > repos > thomaswollmann > detection_viz
changeset 1:ff66bae1f7f8 draft default tip
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/detection_viz/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
| author | thomaswollmann |
|---|---|
| date | Mon, 07 Jan 2019 05:36:36 -0500 |
| parents | 629d9e8ca64c |
| children | |
| files | detection_viz.py detection_viz.xml test-data/out.tif |
| diffstat | 3 files changed, 5 insertions(+), 4 deletions(-) [+] |
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--- a/detection_viz.py Wed Dec 12 04:37:59 2018 -0500 +++ b/detection_viz.py Mon Jan 07 05:36:36 2019 -0500 @@ -32,8 +32,7 @@ if fp is not None: plot_circles(fp, ax, 'darkorange', stroke_size, circle_radius) - fig.canvas.print_png("tmp.png", dpi=1800) - os.rename("tmp.png", output_file) + fig.canvas.print_png(output_file, dpi=1800) if __name__ == "__main__": parser = argparse.ArgumentParser()
--- a/detection_viz.xml Wed Dec 12 04:37:59 2018 -0500 +++ b/detection_viz.xml Mon Jan 07 05:36:36 2019 -0500 @@ -6,8 +6,10 @@ </requirements> <command> <![CDATA[ - python '$__tool_directory__/detection_viz.py' '$input' '$output' --stroke_size $thickness --circle_radius $circle_radius $tp $fn $fp -]]> + python '$__tool_directory__/detection_viz.py' '$input' ./tmp.png + --stroke_size $thickness --circle_radius $circle_radius $tp $fn $fp + && mv ./tmp.png '$output' + ]]> </command> <inputs> <param name="input" type="data" format="tiff,png,jpg,bmp" label="Binary Image File"/>