Mercurial > repos > thomaswollmann > labelimage2points
comparison labelimage2points.xml @ 0:732d95b2b030 draft default tip
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit a0ba841e8b3aee770a3243155bedfac0adf9a5a6
| author | thomaswollmann |
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| date | Wed, 12 Dec 2018 04:38:34 -0500 |
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| -1:000000000000 | 0:732d95b2b030 |
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| 1 <tool id="labelimage2points" name="Label 2 Points" version="0.1"> | |
| 2 <description>Converts label image to points.</description> | |
| 3 <requirements> | |
| 4 <requirement type="package" version="0.12.3" >scikit-image</requirement> | |
| 5 <requirement type="package" version="0.21.0" >pandas</requirement> | |
| 6 </requirements> | |
| 7 <command> | |
| 8 <![CDATA[ | |
| 9 python '$__tool_directory__/labelimage2points.py' '$input' '$output' | |
| 10 ]]> | |
| 11 </command> | |
| 12 <inputs> | |
| 13 <param name="input" type="data" format="tiff,png,jpg,bmp" label="Label image file"/> | |
| 14 </inputs> | |
| 15 <outputs> | |
| 16 <data format="csv" name="output"/> | |
| 17 </outputs> | |
| 18 <tests> | |
| 19 <test> | |
| 20 <param name="input" value="label.tif" /> | |
| 21 <output name="output" value="points.csv" ftype="csv" /> | |
| 22 </test> | |
| 23 </tests> | |
| 24 <help>Calculates the center of mass for all differently colored regions in the image.</help> | |
| 25 <citations> | |
| 26 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> | |
| 27 </citations> | |
| 28 </tool> |