Mercurial > repos > thomaswollmann > mergeneighboursinlabelimage
comparison mergeneighboursinlabelimage.xml @ 0:66f7e94db2e6 draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit d0759a055484abd42bba38b2fa46f2a7b8f96259
| author | thomaswollmann |
|---|---|
| date | Tue, 08 Jan 2019 08:54:16 -0500 |
| parents | |
| children | 3536648d0a93 |
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| -1:000000000000 | 0:66f7e94db2e6 |
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| 1 <tool id="mergeneighboursinlabelimage" name="Merge Neighbours in Label" version="0.1"> | |
| 2 <description>Merge Neighbours in Label Image</description> | |
| 3 <requirements> | |
| 4 <requirement type="package" version="0.12.3" >scikit-image</requirement> | |
| 5 <requirement type="package">numpy</requirement> | |
| 6 <requirement type="package">scipy</requirement> | |
| 7 </requirements> | |
| 8 <command> | |
| 9 <![CDATA[ | |
| 10 python '$__tool_directory__/mergeneighboursinlabelimage.py '$input' '$output' -c $c | |
| 11 ]]> | |
| 12 </command> | |
| 13 <inputs> | |
| 14 <param name="input" type="data" format="tiff,png,jpg,bmp" label="Label Image File"/> | |
| 15 <param label="Distance in pixel of objects which are merged" name="c" type="integer" value="50"/> | |
| 16 </inputs> | |
| 17 <outputs> | |
| 18 <data format="tiff" name="output"/> | |
| 19 </outputs><help>This tools merges nearby objects in a label image using the minimum pixel distance.</help> | |
| 20 <citations> | |
| 21 <citation type="doi">10.7717/peerj.453</citation> | |
| 22 </citations> | |
| 23 </tool> |