Mercurial > repos > thomaswollmann > mergeneighboursinlabelimage

annotate mergeneighboursinlabelimage.xml @ 0:66f7e94db2e6 draft

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit d0759a055484abd42bba38b2fa46f2a7b8f96259
author thomaswollmann
date Tue, 08 Jan 2019 08:54:16 -0500
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children 3536648d0a93
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66f7e94db2e6 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit d0759a055484abd42bba38b2fa46f2a7b8f96259
thomaswollmann
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1 <tool id="mergeneighboursinlabelimage" name="Merge Neighbours in Label" version="0.1">
66f7e94db2e6 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit d0759a055484abd42bba38b2fa46f2a7b8f96259
thomaswollmann
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2 <description>Merge Neighbours in Label Image</description>
66f7e94db2e6 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit d0759a055484abd42bba38b2fa46f2a7b8f96259
thomaswollmann
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3 <requirements>
66f7e94db2e6 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit d0759a055484abd42bba38b2fa46f2a7b8f96259
thomaswollmann
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4 <requirement type="package" version="0.12.3" >scikit-image</requirement>
66f7e94db2e6 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit d0759a055484abd42bba38b2fa46f2a7b8f96259
thomaswollmann
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5 <requirement type="package">numpy</requirement>
66f7e94db2e6 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit d0759a055484abd42bba38b2fa46f2a7b8f96259
thomaswollmann
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6 <requirement type="package">scipy</requirement>
66f7e94db2e6 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit d0759a055484abd42bba38b2fa46f2a7b8f96259
thomaswollmann
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7 </requirements>
66f7e94db2e6 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit d0759a055484abd42bba38b2fa46f2a7b8f96259
thomaswollmann
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8 <command>
66f7e94db2e6 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit d0759a055484abd42bba38b2fa46f2a7b8f96259
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9 <![CDATA[
66f7e94db2e6 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit d0759a055484abd42bba38b2fa46f2a7b8f96259
thomaswollmann
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10 python '$__tool_directory__/mergeneighboursinlabelimage.py '$input' '$output' -c $c
66f7e94db2e6 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit d0759a055484abd42bba38b2fa46f2a7b8f96259
thomaswollmann
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11 ]]>
66f7e94db2e6 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit d0759a055484abd42bba38b2fa46f2a7b8f96259
thomaswollmann
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12 </command>
66f7e94db2e6 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit d0759a055484abd42bba38b2fa46f2a7b8f96259
thomaswollmann
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13 <inputs>
66f7e94db2e6 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit d0759a055484abd42bba38b2fa46f2a7b8f96259
thomaswollmann
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14 <param name="input" type="data" format="tiff,png,jpg,bmp" label="Label Image File"/>
66f7e94db2e6 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit d0759a055484abd42bba38b2fa46f2a7b8f96259
thomaswollmann
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15 <param label="Distance in pixel of objects which are merged" name="c" type="integer" value="50"/>
66f7e94db2e6 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit d0759a055484abd42bba38b2fa46f2a7b8f96259
thomaswollmann
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16 </inputs>
66f7e94db2e6 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit d0759a055484abd42bba38b2fa46f2a7b8f96259
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17 <outputs>
66f7e94db2e6 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit d0759a055484abd42bba38b2fa46f2a7b8f96259
thomaswollmann
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18 <data format="tiff" name="output"/>
66f7e94db2e6 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit d0759a055484abd42bba38b2fa46f2a7b8f96259
thomaswollmann
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19 </outputs><help>This tools merges nearby objects in a label image using the minimum pixel distance.</help>
66f7e94db2e6 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit d0759a055484abd42bba38b2fa46f2a7b8f96259
thomaswollmann
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20 <citations>
66f7e94db2e6 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit d0759a055484abd42bba38b2fa46f2a7b8f96259
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21 <citation type="doi">10.7717/peerj.453</citation>
66f7e94db2e6 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit d0759a055484abd42bba38b2fa46f2a7b8f96259
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22 </citations>
66f7e94db2e6 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit d0759a055484abd42bba38b2fa46f2a7b8f96259
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23 </tool>