Mercurial > repos > thomaswollmann > points2labelimage
diff points2label.xml @ 0:14525b8c8d67 draft default tip
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/points2labelimage/ commit 356f2556bd629e5473d6711ec71372ea17d3e28f
author | thomaswollmann |
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date | Wed, 12 Dec 2018 05:12:06 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/points2label.xml Wed Dec 12 05:12:06 2018 -0500 @@ -0,0 +1,33 @@ +<tool id="points2labelimage" name="Points 2 Label" version="0.2"> + <description>Points to Label Image</description> + <requirements> + <requirement type="package" version="1.15.4">numpy</requirement> + <requirement type="package" version="0.14.0">scikit-image</requirement> + <requirement type="package" version="0.23.4">pandas</requirement> + </requirements> + <command> + <![CDATA[ + python '$__tool_directory__/points2label.py' '$input' '$output' '$org_file' $has_header $is_tsv + ]]> + </command> + <inputs> + <param name="input" type="data" format="csv" label="Point CSV file"/> + <param name="org_file" type="data" format="tiff" label="Original label image file"/> + <param name="has_header" type="boolean" checked="false" truevalue="--has_header True" falsevalue="" optional="true" label="Does point file contain header?" /> + <param name="is_tsv" optional="true" type="boolean" checked="false" truevalue="--is_tsv True" falsevalue="" help="tab separated input file"/> + </inputs> + <outputs> + <data name="output" format="tiff"/> + </outputs> + <tests> + <test> + <param name="input" value="points.csv"/> + <param name="org_file" value="galaxyIcon_noText.tif"/> + <output name="output" file="out.tif" ftype="tiff" compare="sim_size"/><!--to allow a change in e.g. date--> + </test> + </tests> + <help> This tool converts points to a label image. </help> + <citations> + <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> + </citations> +</tool>