Mercurial > repos > thomaswollmann > points2labelimage
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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/points2labelimage/ commit 356f2556bd629e5473d6711ec71372ea17d3e28f
author | thomaswollmann |
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date | Wed, 12 Dec 2018 05:12:06 -0500 |
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<tool id="points2labelimage" name="Points 2 Label" version="0.2"> <description>Points to Label Image</description> <requirements> <requirement type="package" version="1.15.4">numpy</requirement> <requirement type="package" version="0.14.0">scikit-image</requirement> <requirement type="package" version="0.23.4">pandas</requirement> </requirements> <command> <![CDATA[ python '$__tool_directory__/points2label.py' '$input' '$output' '$org_file' $has_header $is_tsv ]]> </command> <inputs> <param name="input" type="data" format="csv" label="Point CSV file"/> <param name="org_file" type="data" format="tiff" label="Original label image file"/> <param name="has_header" type="boolean" checked="false" truevalue="--has_header True" falsevalue="" optional="true" label="Does point file contain header?" /> <param name="is_tsv" optional="true" type="boolean" checked="false" truevalue="--is_tsv True" falsevalue="" help="tab separated input file"/> </inputs> <outputs> <data name="output" format="tiff"/> </outputs> <tests> <test> <param name="input" value="points.csv"/> <param name="org_file" value="galaxyIcon_noText.tif"/> <output name="output" file="out.tif" ftype="tiff" compare="sim_size"/><!--to allow a change in e.g. date--> </test> </tests> <help> This tool converts points to a label image. </help> <citations> <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> </citations> </tool>