Mercurial > repos > thomaswollmann > projective_transformation
diff projective_transformation.xml @ 0:e3e4b058db67 draft default tip
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
author | thomaswollmann |
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date | Mon, 07 Jan 2019 05:38:46 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/projective_transformation.xml Mon Jan 07 05:38:46 2019 -0500 @@ -0,0 +1,42 @@ +<?xml version="1.0"?> +<tool name="Projective Transformation" id="ip_projective_transformation" version="0.0.4"> + <description>Projective Transformation</description> + <requirements> + <requirement type="package" version="0.14.0">scikit-image</requirement> + <requirement type="package" version="0.23.4">pandas</requirement> + <requirement type="package" version="1.15.4">numpy</requirement> + <!--<requirement type="package" version="1.1.0">scipy</requirement>--> + </requirements> + <command> + <![CDATA[ + python '$__tool_directory__/projective_transformation.py' + '$fixed_image' + '$moving_image' + '$warp_matrix' + ./out.png + && mv ./out.png '$out' + ]]> + </command> + <inputs> + <param name="moving_image" type="data" format="png" label="Moving Image" /> + <param name="fixed_image" type="data" format="png" label="Fixed Image" /> + <param name="warp_matrix" type= "data" format="csv" label="Warp Matrix" /> + </inputs> + <outputs> + <data format="png" name="out" /> + </outputs> + <tests> + <test> + <param name="fixed_image" value="sample1.png"/> + <param name="moving_image" value="sample2.png"/> + <param name="warp_matrix" value="warp_matrix.csv"/> + <output name="out" value="yam.png" ftype="png" compare="sim_size"/> + </test> + </tests> + <help> + This tool performs a projective transformation of the input (moving) image so that it fits the fixed image. + </help> + <citations> + <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> + </citations> +</tool>