Mercurial > repos > thomaswollmann > projective_transformation
view projective_transformation.xml @ 0:e3e4b058db67 draft default tip
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/projective_transformation/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
author | thomaswollmann |
---|---|
date | Mon, 07 Jan 2019 05:38:46 -0500 |
parents | |
children |
line wrap: on
line source
<?xml version="1.0"?> <tool name="Projective Transformation" id="ip_projective_transformation" version="0.0.4"> <description>Projective Transformation</description> <requirements> <requirement type="package" version="0.14.0">scikit-image</requirement> <requirement type="package" version="0.23.4">pandas</requirement> <requirement type="package" version="1.15.4">numpy</requirement> <!--<requirement type="package" version="1.1.0">scipy</requirement>--> </requirements> <command> <![CDATA[ python '$__tool_directory__/projective_transformation.py' '$fixed_image' '$moving_image' '$warp_matrix' ./out.png && mv ./out.png '$out' ]]> </command> <inputs> <param name="moving_image" type="data" format="png" label="Moving Image" /> <param name="fixed_image" type="data" format="png" label="Fixed Image" /> <param name="warp_matrix" type= "data" format="csv" label="Warp Matrix" /> </inputs> <outputs> <data format="png" name="out" /> </outputs> <tests> <test> <param name="fixed_image" value="sample1.png"/> <param name="moving_image" value="sample2.png"/> <param name="warp_matrix" value="warp_matrix.csv"/> <output name="out" value="yam.png" ftype="png" compare="sim_size"/> </test> </tests> <help> This tool performs a projective transformation of the input (moving) image so that it fits the fixed image. </help> <citations> <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> </citations> </tool>