Mercurial > repos > thomaswollmann > wsi_extract_top_view

changeset 1:257397c40c25 draft default tip

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/wsi_extract_top_view/ commit d93e1dd276027cfc3fb518236110395a23d96f66
author thomaswollmann
date Wed, 16 Jan 2019 15:36:04 -0500
parents 9f01fd145af4
children
files wsi_extract_top_view.xml
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/wsi_extract_top_view.xml	Mon Jan 07 08:38:08 2019 -0500
+++ b/wsi_extract_top_view.xml	Wed Jan 16 15:36:04 2019 -0500
@@ -8,11 +8,11 @@
   </requirements>
   <command> 
         <![CDATA[
-        python "$__tool_directory__/wsi_extract_top_view.py" '$input' '$output'
+        python '$__tool_directory__/wsi_extract_top_view.py' '$input' '$output'
         ]]>
   </command>
   <inputs> 
-    <param name="input" type="data" format="svs,tif,ndpi,vms,vmu,scn,mrxs,tiff,svslide,bif" label="Whole Slice Image"/><!--formats taken as listed on https://openslide.org/api/python/-->
+    <param name="input" type="data" format="svs,svslide,vms,mrxs,tif,tiff" label="Whole Slice Image"/><!--formats taken as listed on https://openslide.org/api/python/-->
   </inputs>
   <outputs>
     <data name="output" format="tiff"/>
@@ -25,6 +25,6 @@
   </tests>
   <help>Extracts the top view from a whole-slice image, also known as virtual slide, which are high-resolution images used in digital pathology.</help>
   <citations>
-      <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
+    <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
   </citations>
 </tool>